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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
||||||||  ||||||||||||  | ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||           ||   || | | ||  | | ||     |||   ||   | |  || | ||     || |  | ||| |    |         || |   |    ||||||||   ||   | |       
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagta---gt-----------atacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttga--------ttggatccg----tgtgttgttgcttcctgcag------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||| |   ||||||||||   |||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||    |       |  |     |||    |  ||    | ||       |  | |  |||  | ||  |    | |    ||                                                          
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcaccc----ccctcgctgtttccctaccttctcttcttccatccgtccgctgatgatttggacccgccttccctgcag----------------------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactga----aattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||||||| || ||||| || ||||| ||| | |||||  | ||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||||||||  ||   |        ||||| | | |  |   | ||||||||| | | ||   |||||||    ||||  |    | |  |  |  | |  |  || |                                              
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttgatgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgacaatttgtgggctttttttctttcgttttttcacag---------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat--gtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
| |||||||| || ||||| ||  |||||||  | ||||| || || ||||||||| ||||||||||||| ||||| | ||| |||||||||||||||||||  || | |    | |  |||||  |||||     | |||  || |  | |  | |  ||  |   |||||  | || |||  | |  |  ||    |                                              
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttctccacgatttttttttttttttttttgagtta--ttattagttggtaatgtaaagttgttgatgttgtgggcttgt-gttttttactgcag---------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtg-tatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
| |||| ||| || |||||||| ||||||||  | || || || ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||  ||  | |  |||   | ||||| ||    | ||||    ||| |  || |   | | |  | | | | ||  | |     || |   ||| | |||                                            
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactttagggtttctattaatattgctgagatttcgtatttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa--------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||||||||||||||   ||  | |||||| ||||||| || ||||||||||| || || || ||  | ||||||||||||||||| ||||| || ||||||||  ||     | || ||    ||  |     || |||  |   ||| || |         || ||  |||    | ||||                                                          
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagt-cattactagtttctttccattcgattggcttgagtcct--cattgtttgt-------gtttat-ttttcctttcatag----------------------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagt-tttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||||||||||||||   ||  | |||||| ||||||| || ||||||||||| || || || ||  | ||||||||||||||||| ||||| || ||||||||   |       | ||  |||      |  | | | | |||||| |||||   | ||   |  |                                                                           
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattactagtttcttcgattggcttgagttctcattgtttgtgtttatttt-tcctttcacag---------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705584|gb|BW673565.1|BW673565
EST:     TTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA                         GAGTGTTGGGAAGCGGATTAAGAGCGCCTTGTTGTGGATGGTGACCACTGC
genomic: TTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat ... gaatgtgcagGAGTGTTGGGAAGCGGATTAAGAGCGCCTTGTTGTGGATGGTGACCACTGC