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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag

Basic information

species Glycine max
transcript GLYMA03G07890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||||| |||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || || || | | || | | || ||| || | | || | || || | | ||| | | || | | |||||||| || | |
CCATGAAGACCCTCTGGCTCGCCGTCTACATCGCCGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCCATGTTCTACTACGAGGGCGACCAGGACAAgtaagta---gt-----------atacatatacatttccactctttcctctatcccattgcgcatctgctgctaaactctcactgaatgttgttga--------ttggatccg----tgtgttgttgcttcctgcag------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||| | |||||||||| |||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| | | | ||| | || | || | | | ||| | || | | | ||
CCATGAGGACGCTCTGGCTCGTCGTTTACATCGTTGACGCCGTCCTCGTCTTCCTCGTCATCCCCTTCGCAATGTTCTACTACGAGGGCGACCAGGACAAgtaacctcaccc----ccctcgctgtttccctaccttctcttcttccatccgtccgctgatgatttggacccgccttccctgcag----------------------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactga----aattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
|||||||||| || ||||| || ||||| ||| | ||||| | ||||| ||||| |||||||||||||| ||||| | ||| ||||||||||||||||||| || | ||||| | | | | | ||||||||| | | || ||||||| |||| | | | | | | | | || |
CCATGAAGGATCTTTGGCTTGCTATTTATATCGTGGACGCTATTCTCGTGTTCTTTGTCATCCCCTTCGCAATGTTTTTCTATGAAGGCGACCAGGACAAgttcgtagcttgatgaaattttagtatctctatgttgtaagttttgagttaatcgaatactgatgacaatttgtgggctttttttctttcgttttttcacag---------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat--gtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
| |||||||| || ||||| || ||||||| | ||||| || || ||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||||| || | | | | ||||| ||||| | ||| || | | | | | || | ||||| | || ||| | | | || |
CTATGAAGGATCTTTGGCTTGCCGTTTACATTGTTGACGCTGTGCTTGTCTTCTTCATCATCCCCTTCGCTATGTTTTTCTATGAAGGCGACCAGGACAAgtttgtttctccacgatttttttttttttttttttgagtta--ttattagttggtaatgtaaagttgttgatgttgtgggcttgt-gttttttactgcag---------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtg-tatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
| |||| ||| || |||||||| |||||||| | || || || ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||| || | | ||| | ||||| || | |||| ||| | || | | | | | | | | || | | || | ||| | |||
CGATGAGGGATCTGTGGCTCGCCATTTACATTGTTGATGCTGTACTCGTATTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactttagggtttctattaatattgctgagatttcgtatttctccttttgttagagttgattggttgctgcgagactgaaggaaaataaaataaa--------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32053 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagttttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
||||||||||||||||| || | |||||| ||||||| || ||||||||||| || || || || | ||||||||||||||||| ||||| || |||||||| || | || || || | || ||| | ||| || | || || ||| | ||||
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACAATGTTCTACTACGAAGGTGACCAAGAGAAgtaagt-cattactagtttctttccattcgattggcttgagtcct--cattgtttgt-------gtttat-ttttcctttcatag----------------------------------------------------------

upper sequence: GLYMA03G07890.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37798 (Selaginella moellendorffii), 5'ss of exon 1
CCATGAAGGACCTCTGGCTCGCAATTTACATCCTCGACGCCGTCCTCGTCTTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtatgtggtgctttttaatttttaaaaaatttaagt-tttgtgattattagatactgaaattgatactttgtgctaatagcatggtaacaaaaaaaatactgaaattgaaaatgtgttgtgattttgggaatgtgcag
||||||||||||||||| || | |||||| ||||||| || ||||||||||| || || || || | ||||||||||||||||| ||||| || |||||||| | | || ||| | | | | | |||||| ||||| | || | |
CCATGAAGGACCTCTGGTATGCCGTCTACATCATCGACGCTGTGCTCGTCTTCTTGGTAATTCCTTTTACGATGTTCTACTACGAAGGTGACCAAGAGAAgtaagtcattactagtttcttcgattggcttgagttctcattgtttgtgtttatttt-tcctttcacag---------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705584|gb|BW673565.1|BW673565
EST:     TTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA                         GAGTGTTGGGAAGCGGATTAAGAGCGCCTTGTTGTGGATGGTGACCACTGC
genomic: TTCTTCGTCATCCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtaagtgtat ... gaatgtgcagGAGTGTTGGGAAGCGGATTAAGAGCGCCTTGTTGTGGATGGTGACCACTGC