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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGGTTTTGTGTCTCTCTCATTCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctcttcgtcttgaaactaattgcattcaacttatcattttctttttacttttttttccttggtttcgtttttataattaaatggaaatgaaagag...

Basic information

species Glycine max
transcript GLYMA03G06440.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396175|gb|EV266052.1|EV266052
EST:     TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTCGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|192300483|gb|FG987910.1|FG987910
EST:     TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|7284412|gb|AW597004.1|AW597004
EST:     TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAACCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|9203665|gb|BE329889.1|BE329889
EST:     TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|298196174|gb|HO044565.1|HO044565
EST:     AGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: AGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|9986822|gb|BE660930.1|BE660930
EST:     TCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|298190510|gb|HO032631.1|HO032631
EST:     TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|13789053|gb|BG651644.1|BG651644
EST:     TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|298186402|gb|HO037035.1|HO037035
EST:     TCTTCACCAGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAAAGGCTCAATGCTCCAAAACACTGG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|17401982|gb|BM178764.1|BM178764
EST:     GCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
genomic: GCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGG
EST: gi|208166186|gb|GD959120.1|GD959120
EST:     TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATG                         GCGAGAGGGTTGAAAGAAACACTTGAAG
genomic: TCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctctt ... tgtatttcagGCGAGAGGGTTGAA-GAAACACTTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTTGGTTTTGTGTCTCTCTCATTCTTCACCCGCTCAGCACGCAGAGGAGCAGAAGCCTAAGCCTTCAACATGgttagctcttcgtcttgaaactaattgcattcaacttatcattttctttttacttttttttccttggtttcgtttttataattaaatggaaatgaaagag

- - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaaa