Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcattaattaatcttattgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttgaat...

Basic information

species Glycine max
transcript GLYMA03G04880.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04880.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g02100.1 (Oryza sativa), 5'ss of exon 1
CCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcattaattaatcttattgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttgaat
    |  |||||    |     || |   |||| ||    || |||   |||||||||||||| |||||||| || || |||||||| ||||||||| | | ||||  |  |  |    ||  | ||   |  | | | |  |  | ||  |||  |    ||    |   |||    | | |                 
----TCCACCATCCGAACAGCGGTGAGATCTGCCGTAGCAAAGGAGAACCGCATGGGTGCATCATTGCTCCGCCTCCACTTCCATGACTGCTTTGTCAATGAAAgt-gtccagaacctgtacagatactcaagtttttct-cacttctaagtatcaagtactaaccttcagtattctgacaatgcag-------------

upper sequence: GLYMA03G04880.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
CCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcattaattaatcttattgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttgaat-
||| |  | ||| ||      ||| | | | || |||   || ||| |||||||||| |||||| |||||||||||||||||||||||||||||||  | | |||||||   ||| || | |   | |  ||         | ||| |||  |    |  ||   ||| |       |||   ||| ||||   ||  |  
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttat-tattaaccatttcatgcttattttctggattatcgctttcttttaacttatagc

upper sequence: GLYMA03G04880.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00980.t01 (Vitis vinifera), 5'ss of exon 1
CCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcattaattaatcttattgttatatatatatatatatatatatatatatatatatatatata-tatatatatatatatttttttttttttttgaat
||| |  |  || ||      ||| | | |||| |||  ||  ||  |||||||||| || ||| ||||||||||||||||||| || ||||||||  | | ||||||  | ||  || |||   |  || |  ||     | ||    ||   || |    ||||  |  ||   | |||| ||||   |  |  |    
CCTTTCAATAATCAAATCTGCAGTGAACTCTGCAGTGAAGAGTGAAGCTCGCATGGGGGCGTCCCTGCTCCGTCTTCATTTCCACGACTGCTTTGTTAATgcaagtcaccacttcctcatatatctccattttcatgagcctttaatcttaaccattttataatattctgcatggctttatacttttacctcatgcttgt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283618|gb|BE021177.1|BE021177
EST:     GCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAA                         GGATGTGATGCATCGGTTTTGTTAAAGAACACTGCAACTTTCACGGGCGAA
genomic: GCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcatt ... ctctttgcagGGATGTGATGCATCGGTTTTGTTAAAGAACACTGCAACTTTCACGGGCGAA
EST: gi|41145663|gb|CK605874.1|CK605874
EST:     GCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAA                         GGATGTGATGCATCGGTTTTGTTAAAGAACACTGCAACTTTCACGGGCGAA
genomic: GCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcatt ... ctctttgcagGGATGTGATGCATCGGTTTTGTTAAAGAACACTGCAACTTTCACGGGCGAA