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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACGAGTGCACACGTGGGAGCCATGTCTAGTTCTACATGCTTCCCTTCACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaactagttactcataattcaattctagttttatgtgctcagttccacttgtcctggaatacagtacgaggtttttttgagacactgccaatca...

Basic information

species Glycine max
transcript GLYMA03G01960.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313607|gb|FK007283.1|FK007283
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCAGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|192318364|gb|FK007282.1|FK007282
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCAGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|298191837|gb|HO035919.1|HO035919
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|209708526|gb|BW668137.1|BW668137
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|120496729|gb|EH224896.1|EH224896
EST:     CTTCGACCTTCTTTCA-CAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
genomic: CTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|6133930|gb|AW132323.1|AW132323
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
EST: gi|298164909|gb|HO010906.1|HO010906
EST:     ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTA                         AGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG
genomic: ACTTCCTCGACTTCTTCGACCTTCTTTCACCAAAACCAAATCATCACCTAgtaagttaac ... tctttatcagAGTTCAGCATGAGCATGAGCAAGGATCCGGTTCGTGAGTGGATTCTTTCTG