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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTCGCCCGATCGCGGCGGTTCTCCGCCGCGATTCCCGGTCCGTGCATTGTTCACAAGCGCGGTGCCGACATACTCCACGATCCCTGGTTCAACAAGgtttctttctcgcatcacaaaaactttttaacttggctttcctttttttaccag

Basic information

species Glycine max
transcript GLYMA03G01680.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 1
--CAACCTCGCCCGATCGCGGCGGTTCTCCGCCGCGATTCCCGGTCCGTGCATTGTTCACAAGCGCGGTGCCGACATACTCCACGATCCCTGGTTCAACAAGgt-ttctttctcgcatcacaaaaactttttaacttggctttcctttttttaccag---------------------
  |  |  | |||| | || ||||  |  ||||||| | ||||| || ||||| || |||||||||||  ||||||| |||||||| || ||||||||||||||   |  ||||||       |  | |         ||  |     | | || |                      
GCCGGCGGCCCCCGCT-GCCGCGGC-CGGCGCCGCGGTGCCCGGCCCCTGCATCGTCCACAAGCGCGGCACCGACATCCTCCACGACCCATGGTTCAACAAGgtacccgatctcgcgatctgcatgcctcgctctcgcgcgctggggctctcacgatttcgtttctggcacaccgcag

upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 1
CAACCTCGCCCGATCGCGGCGGTTCTCCGCCGCGATTCCCGGTCCGTGCATTGTTCACAAGCGCGGTGCCGACATACTCCACGATCCCTGGTTCAACAAGgtt-tctttctcgcatca------caaaaactttttaacttggctttcctttttttaccag---------------------------------------
 | ||||   |||||||||||||||||| | |||||||| |||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || |||||| | ||||||   |        |       |||| | ||  | |  ||| | |   ||                                        
GAGCCTCCGGCGATCGCGGCGGTTCTCCACGGCGATTCCAGGTCCGTGTATTGTTCACAAGCGTGGTGCAGATATTCTCCACGATCCGTGGTTTAATAAGgttatatttctcattttgttctaccggtggtgttttgatttttcgtaacttgtgtggtcattttttatttttgttatgtttttgtggccatcatttttat