1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAAAAAATTGAATTGAATTGCATTGCATTGCTTTTGCTGCGTTGAAAATCCGAAGAAATCGAATTGCATTGCTCCGTGAAAAAAATGGAAAGCGAGAAAGgtgagagttccaatgagcgcgaaactagaaatcatgaaatgacaaagagtttcgttttttttaaagcaatcaaaacatgatagtggagatttttgaagctgagattttttttttggttcgtttttggtttgatgtttttggattttggtatttgcag
species | Glycine max |
transcript | GLYMA03G01210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAAGAAATCGAATTGCATTGCTCCGTGNNNNNNNTGGAAAGCGGGAAAG CGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGTEST: gi|209714420|gb|BW659104.1|BW659104
genomic: CGAAGAAATCGAATTGCATTGCTCCGTGAAAAAAATGGAAAGCGAGAAAGgtgagagttc ... gtatttgcagCGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGT
EST: CGAAGAAATCGAATTGCATTGCTCCGTGNNNNNNNTGGAAAGCGAGAAAG CGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGTEST: gi|15662349|gb|BI699720.1|BI699720
genomic: CGAAGAAATCGAATTGCATTGCTCCGTGAAAAAAATGGAAAGCGAGAAAGgtgagagttc ... gtatttgcagCGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGT
EST: CGAAGAAATCGAATTGCATTGCTCCGTGNNNNNNNTGGAAAGCGAGAAAG CGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGT
genomic: CGAAGAAATCGAATTGCATTGCTCCGTGAAAAAAATGGAAAGCGAGAAAGgtgagagttc ... gtatttgcagCGTTTGAGTTTCTCGGATGCGTTCCTCTCCTGCAGAGGCTTCCGAGCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAAAATTGAATTGAATTGCATTGCATTGCTTTTGCTGCGTTGAAAATCCGAAGAAATCGAATTGCATTGCTCCGTGAAAAAAATGGAAAGCGAGAAAGgtgagagttccaatgagcgcgaaactagaaatcatgaaatgacaaagagtttcgttttttttaaagcaatcaaaacatgatagtggagatttttgaagctgagattttttttttggttcgtttttggtttgatgtttttggattttggtatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA