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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAAGCACAAGAAAATCAGATACTTGTGGGTGTGGCCGTGGCCGTTGTAGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctttttcaactttatgttatacccatttgaaattctatgcttttactttgatttatgcataagggtcttctttttcttagttctacatgtaag...

Basic information

species Glycine max
transcript GLYMA03G00920.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301598|gb|FG994782.1|FG994782
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|213587981|gb|DB971456.1|DB971456
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|213617616|gb|DB969328.1|DB969328
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|209728695|gb|BW655402.1|BW655402
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|151407227|gb|EV277042.1|EV277042
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|10236160|gb|BE805048.1|BE805048
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|151394787|gb|EV264658.1|EV264658
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|4285741|gb|AI440947.1|AI440947
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|151401464|gb|EV271278.1|EV271278
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|298174935|gb|HO014852.1|HO014852
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|193327580|gb|FK292971.1|FK292971
EST:     ATTCATCCAAGAAGACC-AAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: ATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|207766661|gb|GD738289.1|GD738289
EST:     CTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: CTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|298189804|gb|HO038207.1|HO038207
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|13788917|gb|BG651508.1|BG651508
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|208183354|gb|GD985272.1|GD985272
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|18690778|gb|BM519626.1|BM519626
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|193406399|gb|FK373048.1|FK373048
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|298186113|gb|HO036746.1|HO036746
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|151399348|gb|EV269219.1|EV269219
EST:     GAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: GAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|298178943|gb|HO024678.1|HO024678
EST:     AGCCATTGGGCTTGGTGCAGTCTATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
EST: gi|4285622|gb|AI440930.1|AI440930
EST:     AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAG                         GTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC
genomic: AGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctt ... gtgcttatagGTTGCTTGGACCCAGAGAACTTTAAGGCATTCAAACTTGTTAAGCGTGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCAAGCACAAGAAAATCAGATACTTGTGGGTGTGGCCGTGGCCGTTGTAGCCATTGGGCTTGGTGCAGTATATCTCTATTCATCCAAGAAGACCAAAGgtttcacctttttcaactttatgttatacccatttgaaattctatgcttttactttgatttatgcataagggtcttctttttcttagttctacatgtaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG