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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag

Basic information

species Glycine max
transcript GLYMA02G48030.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttg-tctagtagtgtttaacttatct---gttcattgtttgattcattcattgattgattc-attgattgattgattcag------
||| | || ||  | ||||| ||||||||||||||||| ||| |||| ||||| ||||||| |||||| || ||||| || |||||||| ||||||||||||  || |  || ||   || | |    |  || ||| ||   | || || | |    |   ||||   |||| |     | |  | ||  |        
AGGATGGCCAACCTCATCGGCTACTGCTGCGACGGCGACGAGCGGCTCCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTCTTCCACTgtgagtttcctccctccctccactcccctgcaatttaactccgggtctttatattcccctcccatttgatgatcctgccaactattcgacccttctggtc

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtctt------atctcttgtctagta-gtgtttaactta---tctgttcattgtttgattcattcattgattgattcattgattgattgattcag--
 |  | || ||  | ||||| ||||||||||| || || ||| |||||||||| ||||||| |||||| || ||||| || ||||||||  ||||||| |||  ||  |      |||| |  | |  || ||   |  || |   |||| |||      || |  ||  ||   | || |  | |    | |   ||   
CGCTTGGCGAACCTCATCGGCTACTGCTGCGATGGGGACGAGCGGCTTCTCGTCGCCGAGTTCATGCCCAACGACACCCTAGCCAAGCACGTCTTCCATTgtgagttattggaatatctttcttttgataagttcctttctgaatttctgatcaccaggagactttttttttccat-atccgataaacactggtcgcaaaa

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G127050_T02 (Zea mays), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-------------
 | || || ||  ||||||| ||||||||||||||||| ||| | || ||||| ||||||| |||||| || ||||| || |||||||| ||||||||||||| || ||  ||| |   ||    |  |   |   |  || | || | ||||  |  |  |   ||  |   || |||  ||    |              
CGCCTGGCCAACCTGATCGGCTACTGCTGCGACGGCGAGGAGCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtacgtttt-cctcctccttaccgatcctctgcccgttggtccgtt-tctgataaagccgctttctggatttctgcttggctgcgggatgtctcgctgccca

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G099598_T01 (Zea mays), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-------------
 | || || ||  | ||||| |||||||||||||| || ||| |||| ||||| ||||||| |||||| || ||||| || |||||||| ||||||||||||  || |   |||||| | |          | |   | |||  |  |   | ||  |   || |||  |    |||  ||     | |             
CGCCTGGCCAACCTCATCGGCTACTGCTGCGACGGGGACGAGCGGCTGCTCGTCGCCGAGTTCATGCCCAACGACACGCTCGCCAAGCACCTCTTCCACTgtgcgtttg--ctcttgccgatcctctgcccattggcccgtttctgataaaagtcgctttctggttgcctgtgagatatatctcgccggccattttcggtaa

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgat--tcattcattgattg--attcattgattgattgattcag----------
||  | || ||  | |||||||| |||||||||||||| ||  | || ||||| ||||||| |||||| || ||||| || |||||||| || |||||||||  | |   |||| ||    | |||   |  | | | |||  |   ||||||  |  | ||  ||| |  | ||  || |    | || |||          
AGCATGGCGAACCTTATCGGTTATTGCTGCGACGGCGACGATCGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACCTTTTCCACTgtgagcccc-tctcgtgctctgcagttcgttgcctgtatgt--accatttgatcatgttccaaagatcggcactcgctgctatgctaatgcagtgcaattctg

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctc-ttgtctagtagtgtttaacttat--ctg-----ttcattgtttgattcattcattgattgatt-cattgattgattgattcag-------------------------------------------------------------------------------------------
 |  | || |||||||| || || || || || || |||||||||||||| ||||| |||| |||||||||||| |||||||| |||||| | ||||| ||||||  || |||| || | |  | |  | |    ||   |||     || | |  |   | |    |||    | || |||| || | ||   | ||                                                                                           
CGATTAGCGAATTTGATTGGATATTGTTGTGATGGAGATGAGAGGCTTCTTGTTGCTGAGTTCATGCCTAATGATACTCTTGCTAAGCATTTGTTCCATTgtatgctttttctccttcttttattgcctcttgtctaaagctgggaactttagtaatgtttgctgatattaggagcttgcatttatggtttatgttagatggatgaaaagagactactttaggtgaattataatgtcttaaaaggtgaatttttgtttcttatcttgttgttgttttggttattcacag

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 2
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-------------
|| || || ||| |||| ||||| ||||| || || ||||||||| | || ||||| ||||||||||| ||||| |||||||| |||||| | ||||||||||||| ||   |      | | | | | ||  |||     | || | |   ||  |||  || ||  |   ||| || ||| |||                
AGACTTGCCAATCTGATTGGTTATTGCTGTGATGGTGATGAGAGGTTGCTTGTTGCTGAGTACATGCCAAATGATACTCTTGCTAAGCATTTATTCCACTgtatgttttcatttggaatttgaattttgtatgttacactctaatcgatgcctttgttc--tggttcttagtttgttttattcatttgacctctgtgctaac

upper sequence: GLYMA02G48030.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGCTCGCTAATTTGATCGGTTACTGCTGCGACGGCGATGAGAGGCTTCTCGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtcttatctcttgtctagtagtgtttaacttatctgttcattgtttgattcattcattgattgattcattgattgattgattcag-----------
||  | |  ||| | || || |||||||| || || |||||| | ||||| || || ||||| ||||| ||||||||||| || |||||| | |||||||||| ||   |||| |  | ||   | | |    | |   | | |   |||   || |||| ||||   |  |||   | |    |               
AGATTGGTGAATCTAATTGGGTACTGCTGTGAGGGTGATGAGCGTCTTCTTGTCGCGGAGTATATGCCAAATGACACTCTCGCAAAGCATTTGTTCCACTgtaagtgacatctttgctgtatgggaggtctgataacaagataaccttttctgtctttcaatgatgattctattctgtaagaagtgttttgcgctaacat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285890|gb|BE023449.1|BE023449
EST:     CGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACT                         GGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACA
genomic: CGTTGCCGAGTACATGCCTAATGACACTCTTGCCAAGCATCTCTTCCACTgtatgtctta ... attgattcagGGGAAACTCAGACTATTGAGTGGGCCATGCGGTTGCGAGTGGCTCTGTACA