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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTAATTGGCAAATTGATTTTGGCTTGCTCGGCAACACGGTGGGAGCATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttcttctttgctcaacactttatcagatccgcgtttctcttacgaccacatcactatcatttttgctttactatctgttcctatttttctattt...

Basic information

species Glycine max
transcript GLYMA02G47860.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193682308|gb|FK623000.1|FK623000
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAG
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAG
EST: gi|208133711|gb|GD928340.1|GD928340
EST:     ATTCTTCGCTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|193315220|gb|FK282616.1|FK282616
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATT
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTT-CATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATT
EST: gi|298197389|gb|HO044868.1|HO044868
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|193306951|gb|FK268803.1|FK268803
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|193376725|gb|FK340920.1|FK340920
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|207793311|gb|GD765595.1|GD765595
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|193307600|gb|FK270628.1|FK270628
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|193369201|gb|FK337093.1|FK337093
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|208032921|gb|GD829978.1|GD829978
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
EST: gi|298168588|gb|HO009518.1|HO009518
EST:     ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTC                         ATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC
genomic: ATTCTTCACTTGTCCTTGGTTTTGGAACGACGACAGCCGAGCTATCTCTCgtaagcttct ... tggattgcagATTCCATTTTCATCCATCAATGGCTCCAGTAGCAGCAGCATCTTCAGATTC