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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGAAGCAGCTCAATGAGTTGGTCCGCAAGACCGGTGGCGCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaacattatgattattagtgttattattgttatggaatgtaactataagttggtatgcatgaacaaaacaacag

Basic information

species Glycine max
transcript GLYMA02G47560.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47560.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G105518_T01 (Zea mays), 5'ss of exon 1
---CTCTGAAGCAGCTCAATGAGTTGGTCCGCAAGACCGGTGGCGCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaa-----ctcaacattatgattattagtgttattattgttatggaatgtaactataagt---tggtatgcatgaacaa-aacaacag----------
     ||   ||||  |  ||   |   ||||    |||| | ||  | |    | |||| || ||||||||| ||||||||||||||||| |||||||| |||||      | |  |       | ||| |||| | ||     |  |      ||| | |||   ||  |  || | ||    ||  | |          
GCTTCCTAGGGCAGGCCC-TGGTCT--CCCGCCCCGCCGGCGTCGATGCCGGCAGCCGCATCACCATGCGCCGCACCGTCAAGAGTGCTCCCCAGAGCATCTGgtacgtgctccctgcgccgcattcattcgtgtcactaagaggagaggtgaggactgtgagtaactgacagacacgtacgctgactgctgctgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595663|gb|DB972133.1|DB972133
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|192294208|gb|FG986297.1|FG986297
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|7685785|gb|AW756433.1|AW756433
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|6915415|gb|AW396945.1|AW396945
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|10846924|gb|BF069767.1|BF069767
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGGTCCAT
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGG-TCCAT
EST: gi|31561185|gb|CD487023.1|CD487023
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15663298|gb|BI700669.1|BI700669
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|10237400|gb|BE806288.1|BE806288
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|209724756|gb|BW651487.1|BW651487
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15589845|gb|BI674461.1|BI674461
EST:     GCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|7041938|gb|AW471832.1|AW471832
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|213596280|gb|DB961980.1|DB961980
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|10844085|gb|BF067422.1|BF067422
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|208279216|gb|GE079233.1|GE079233
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|22540884|gb|BU090727.1|BU090727
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|8825985|gb|BE209715.1|BE209715
EST:     GGTCGCACCAACATGCTCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|209721830|gb|BW680016.1|BW680016
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|207751254|gb|GD725683.1|GD725683
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCC
EST: gi|193578066|gb|FK533842.1|FK533842
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCA
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCA
EST: gi|17153522|gb|BM143455.1|BM143455
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|120492420|gb|EH220587.1|EH220587
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|20207881|gb|BQ133970.1|BQ133970
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15338052|gb|BI498708.1|BI498708
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|7692132|gb|AW760246.1|AW760246
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|6134802|gb|AW133195.1|AW133195
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|8286541|gb|BE024100.1|BE024100
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|120529225|gb|EH257359.1|EH257359
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|120528981|gb|EH257115.1|EH257115
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|9259369|gb|BE347516.1|BE347516
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|26060137|gb|CA803051.1|CA803051
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15285321|gb|BI469212.1|BI469212
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|209722435|gb|BW668737.1|BW668737
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|9899199|gb|BE608097.1|BE608097
EST:     CAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: CAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|26043895|gb|CA782219.1|CA782219
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|298179698|gb|HO024913.1|HO024913
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCGGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|17964223|gb|BM270961.1|BM270961
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|26267979|gb|CA819042.1|CA819042
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|120492468|gb|EH220635.1|EH220635
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|17519577|gb|BM188619.1|BM188619
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|120529728|gb|EH257862.1|EH257862
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|20207596|gb|BQ133685.1|BQ133685
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|213617664|gb|DB967559.1|DB967559
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|193441695|gb|FK409144.1|FK409144
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGACCCTAGATCGTCCCA
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGG-CCCT-GATCGTCCCA
EST: gi|17154091|gb|BM144024.1|BM144024
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|9258961|gb|BE347108.1|BE347108
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|31562002|gb|CD487840.1|CD487840
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15287951|gb|BI471842.1|BI471842
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|7041928|gb|AW471822.1|AW471822
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15664388|gb|BI701759.1|BI701759
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|7146131|gb|AW508053.1|AW508053
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|15664443|gb|BI701814.1|BI701814
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|10844394|gb|BF070973.1|BF070973
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTTCCATTCTCAGAGCAGATTC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGG-TCCATTCTCAGAGCAGATTC
EST: gi|120533945|gb|EH262078.1|EH262078
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
EST: gi|31561005|gb|CD486843.1|CD486843
EST:     GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTG                         GTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC
genomic: GGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaac ... aaaacaacagGTATGGCCCTGATCGTCCCAAGTACCTGGGTCCATTCTCAGAGCAGATTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGAAGCAGCTCAATGAGTTGGTCCGCAAGACCGGTGGCGCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGgtaactcaacattatgattattagtgttattattgttatggaatgtaactataagttggtatgcatgaacaaaacaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA