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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCACCAAAAATCGGTCGCAATCCTGTAATTGTTACCCCTAAAGCAGTTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcacctccattttctttctttccttgttattacataaaattagtgagaaatttgaaatccccattcttatatttcttagggtgtacttgttgat...

Basic information

species Glycine max
transcript GLYMA02G47460.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533162|gb|EH261295.1|EH261295
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|151410342|gb|EV280157.1|EV280157
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|120530332|gb|EH258465.1|EH258465
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|20811982|gb|BQ296460.1|BQ296460
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGTAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|213599018|gb|DB971990.1|DB971990
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|7691386|gb|AW759443.1|AW759443
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
EST: gi|209701382|gb|BW655980.1|BW655980
EST:     TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCAATGCTAGCAGA                         AGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA
genomic: TTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcac ... atgtttatagAGTGTGCTTGGCATTATACTTGGAGGTGGTGCTGGGACTCGTCTTTATCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCGCACCAAAAATCGGTCGCAATCCTGTAATTGTTACCCCTAAAGCAGTTTCTGATTCCCAAAACTCCCAAACCTGTCTTGATCCCGATGCTAGCAGAgtgcgttcacctccattttctttctttccttgttattacataaaattagtgagaaatttgaaatccccattcttatatttcttagggtgtacttgttgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctcc