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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAATCTCCAAAACGACGCCGCACCACCCAACGGATTGACGCAGGACATGATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAGgtcttcttctcttctacacttaattatcattcatgcaacataaacctaattacgtttaaattgactatgaaggaagattcatattcattgcacgtgtgtg...

Basic information

species Glycine max
transcript GLYMA02G46300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46300.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 5'ss of exon 1
ATTAATCTCCAAAAC-GACGCCGCACCACCCAACGGATTGACGCAGGACATGATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAGgtct-tcttctcttctacactta----att--atcattcatgcaacata---aacctaattacgtttaaattgactatgaaggaagattcatattcattgcacgtgtgtg
 |  || || | | | ||  | ||  |     ||||| |  | | ||| |||||  || | || |||||||||||| ||||||||||||| || ||||||||| | |  | | | ||  |||      ||   ||  ||||| |||  ||   ||   || |   ||    |||  | |||| |  || |   || || |           
-TCCATGTCAATAGCTGATTCGGCTGCCGGACACGGACTCTCCCCGGATATGATCTACCGGTATAGTCGCCACCTTTTGCTTCCTTCCTTCGGAGTTCAAGgtttgtactttgtactggactggtcggatcgaatgcttcattcaaagtatgaaattcaactgttttc---ttgcttttgaaagctgaatgtaatgcaattttt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398595|gb|EV268466.1|EV268466
EST:     GATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAG                         GGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGTTGGAGGAT
genomic: GATTCACAGATACAGTCGCCACCTTGTGCTTCCTTCCTTTGGTGTTCAAGgtcttcttct ... tggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT
EST: gi|208322368|gb|GE122577.1|GE122577
EST:     CTTCCTTCCTTTGGTGTTCAAG                         GGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT
genomic: CTTCCTTCCTTTGGTGTTCAAGgtcttcttct ... tggagtgcagGGCAGGCAAATCTGTTGAAGTCTTCAATTTTAGTTGTGGGAGCTGGAGGAT