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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCAGCAAAGTTATTTGCCTCCTGATTCACTCATGACATGGTATCTTGCTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAGgtatcaatcatcatgaacccctttgtgcttttttcctattgaaaacttatattctatcatgctaccttcaatagtgaaacaaattagttttttcatggtaactagaatagacgattattgtgtttttctcacaagttacatttttcactgcag

Basic information

species Glycine max
transcript GLYMA02G44660.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44660.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 1
CAAGCAGCAAAGTTATTTGCCTCCTGATTCACTCATGACATGGTATCTTGCTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAGgtatcaatc-atcatgaacccctttgtgcttttttcctattgaaaacttatattctatcatgctaccttcaatagtgaaacaaattagttttttcatggtaactagaatagacgattattgtgtttttctcacaagttacatttttcactgcag
||||  |    |     |||    ||||||  ||||| | ||||||||  |  | |||| |||||| |||||||| || ||||||||||| ||||||||||||| | |     || || |  |||    | |  |||  ||| ||  | |||        |   |  |||| || ||  || ||  |      |   | | | | |                                                
CAAGTCGGCCGGCCCCGTGCTCGATGATTCGATCATGTCGTGGTATCTGTCCATGGAGAGTGGCAAGTTCTGGTTCCCGGCTCAGGTCTACAACCGTGAGgtataactttggaatcaagcaattttaattatcatccctttgcaa-ttaatagc------tagcagtttcattattgtcaccaagcatgcaaattgggatgatttgt-----------------------------------------------

upper sequence: GLYMA02G44660.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g02700.t01 (Vitis vinifera), 5'ss of exon 1
CAAGCAGCAAAGTTATTTGCCTCCTGATTCACTCATGACATGGTATCTTGCTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAGgtatcaatcatca-----tgaacccctttgtg------cttttttcctattgaaaacttatattctatcatg--ctaccttcaatagtgaaacaaattagttttttcatggtaactagaatagacgattattgtgtttttctcacaagttacatttttcact-gcag
|   |||   || |   | ||    |||||  ||||| | |||||||||||||||||||||||||  || ||||| ||||| ||||| || || ||||||||||  |   | |     ||   ||   | |       || | || | | |  || ||   | |   | | |    |  |  |  |   |||| || |   || |   |  |   | |       | || || | ||  |     ||||    ||  |   | ||||
CCCACAGAGGAGCTCAGTTCCAGTGGATTCCATCATGTCTTGGTATCTTGCTCTTGAGACTGGCAGGTTTTGGTTCCCTGCACAGGTTTACAATCGTGAGgtatggactgtaactgcttgtttccagctataaattgtctgtctttcaacttcaatctcccacttccttaaggctcatgtctacaacctaaacgaagtcacttctgtttattcttttgctctctgggtttttcttttcataatggaagtgtttttgctgtttagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259413|gb|BG882321.1|BG882321
EST:     CTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAG                         AATGGCCATGTTGGATTTATGTTGTCATGCTATGATGCTGAGCTTAGCTAT
genomic: CTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAGgtatcaatca ... ttcactgcagAATGGCCATGTTGGATTTATGTTGTCATGCTATGATGCTGAGCTTAGCTAT
EST: gi|6482324|gb|AW201591.1|AW201591
EST:     CTCTTGAGACTGGCAATTTCTGGGTTCCTGCTCAGGTCTATAACCGTGAG                         AATGGCCATGTTGGATTTATGTTGTCATGCTATGATGCTGAGCTTAGCTAT
genomic: CTCTTGAGACTGGCAATTTCTGGTTTCCTGCTCAGGTCTATAACCGTGAGgtatcaatca ... ttcactgcagAATGGCCATGTTGGATTTATGTTGTCATGCTATGATGCTGAGCTTAGCTAT