Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAATCGCACTAATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacacttataacatcaactcaatgtcttatgaaaaaaaattgattttttactgtttttgatatttggattattgaatctgtatgtgggttttcgagttcag

Basic information

species Glycine max
transcript GLYMA02G44460.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299184|gb|FG990456.1|FG990456
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|9565730|gb|BE475239.1|BE475239
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|21889907|gb|BQ743120.1|BQ743120
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|192314009|gb|FK010345.1|FK010345
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|254342849|gb|GR859011.1|GR859011
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|19052795|gb|BM731462.1|BM731462
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|7925296|gb|AW831322.1|AW831322
EST:     GGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|38191164|gb|CF920370.1|CF920370
EST:     ATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: ATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|17022325|gb|BM093359.1|BM093359
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298166777|gb|HO010216.1|HO010216
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|193587552|gb|FK542587.1|FK542587
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|33388439|gb|CA851646.1|CA851646
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|18040489|gb|BM308783.1|BM308783
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|151409528|gb|EV279336.1|EV279336
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|16519545|gb|BI347330.1|BI347330
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|4306961|gb|AI443979.1|AI443979
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298194998|gb|HO043526.1|HO043526
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298190179|gb|HO032300.1|HO032300
EST:     GGCTTCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|17963362|gb|BM270112.1|BM270112
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|14259428|gb|BG882336.1|BG882336
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|41145960|gb|CK606171.1|CK606171
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298169772|gb|HO021132.1|HO021132
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|192296967|gb|FG990283.1|FG990283
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|12689248|gb|BG155584.1|BG155584
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298198832|gb|HO042195.1|HO042195
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298169624|gb|HO020984.1|HO020984
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|192332130|gb|FK024590.1|FK024590
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
EST: gi|298190147|gb|HO032268.1|HO032268
EST:     GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGG                         GGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA
genomic: GGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGgtaacactta ... tcgagttcagGGATCAGTTGACAAAGGATGATATTAAAGTGTATGCAGCTGTTGTTGAAAA