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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgttactgtctgttactttaatttatttatact...

Basic information

species Glycine max
transcript GLYMA02G44250.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgt-tactgtctgttactttaatttatttatact-
 |||||| | |   || || ||||||||||| ||||| ||||| |  ||||| || |||||||||||||||||| |||  |||||||| ||||| ||  |||  ||  || ||||| ||| ||| |||||   |   ||  |  | |||| | ||       | | |||  |||| |  | |  ||      | |    |  
GGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc-ctctccctccctccctctcctcgcgctgcgctgtactgt-acgcgtaggctcgagttgggtacttttgggtgtttgggggaactggatcgc

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g17250.1 (Oryza sativa), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgttactgtctgtt-actttaatttatttatact
|||||||      ||| |||||||||||||| || || ||||| |  ||||| || |||||||||||||||||| |||  | |  ||| ||||| ||  |||  |   |  ||| | | | | | |   | | |     |  |   ||| | ||     | ||     |||    ||  |    | |    |  || |  |
CGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGCCGGCCGCGTCACCCGCCTgtgagt-ccacctcccccccccccaccgccgccgccgcctcgccgactgagctggctactaccggccggttttgctccctccgttgtgtactgcttttgtt

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgttactgtctgttactt-taatttatttatact
 |||||| | |  ||| || ||||||||||| ||||| ||||| |  ||||| || |||||||||||||||||| |||  |||||||| ||||| ||  |||  ||   | |   |||||   ||||| |||| | | |  || || |     || ||     | | |    |   | ||  | | |   |       |  
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaa-ctctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G815009_T01 (Zea mays), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttc---tgtgatgcagctttcctaattgttactgtctgttactttaatttatttatact
 |||||| | |  ||| || ||||||||||| ||||| ||||| |  ||||| || |||||||||||||||||| |||  |||||||| ||||| ||  |||  ||  |  |   |   ||||| |||   ||   |    ||||||   || |   |  |      |||  |  ||    |       | || | | ||   
GGGACCCCGGCGGCGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgctgcctcccaactctccctcgtcctcgctcccccctttcccctgcggcccgcccccttcaataatcccttgacggggggaaacttcagt-atg--

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G21090.1 (Arabidopsis thaliana), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtga-----tgcagctttcctaattgttactgtctgttactttaatt-tatttatact
| || || ||| | |||||||||||||||||||| ||||| |||| ||| ||||| |||||||| |||||||| ||||| |||||||| |||||||| ||||| | ||||||| |     | ||||    | ||      |   |||    |     ||  |   | ||| ||| ||| |||||  | |||   | ||||||    
CAGATCCAGACCATGTCCTCCAGAGCTGGGATCCAACTCTTGTTAATCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACAACCGCGTCACTCGTGTgtaag-atcctcttttctcttatctcctgttttgaacaagttgattcgccaagaatctgtggagattcta-ttgatacagtctgaaatttttgctctattta----

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttg--ttcctttctgtgatgcagctttcctaattgttactgtctgttactttaatttatttatact--
| || || |||||||| ||||||||||||||||| |  ||||| |  || ||||| ||||||||| ||||||| || ||||||  ||| |||||||||||||||| || |||| ||| |||    ||||||  |||||   ||| || |||  ||  || ||||   ||    | | | | ||  | || ||||||| | |   
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttc---atctcgagtttttatttatata-tttatttctccctt

upper sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 1
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgttactgtctgttactttaatttatttatact
| || || || |||| ||| |||||||||||||| || ||||||| ||| || |||||||| || |||||||| ||||||||||| || || ||||||||||||        || ||||    || ||| |||||||| || ||||||    |    |||      |  || ||  |||  |   |     |  ||   |
CAGATCCGGATAACGCCCTTCAGAGCTGGGATCCAACCCTCGTTAATCCTTGCACTTGGTTTCATGTCACCTGTAACCAGGACAATCGCGTTACTCGAGTgtatcttcttcttcactctgcgcctttctttctgttttttttctttcttcattttcccttaggctctgtttgcttcctgacagcatttgggaaataaggt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396362|gb|AI495359.1|AI495359
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|298181464|gb|HO022903.1|HO022903
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|298172702|gb|HO019742.1|HO019742
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|6668064|gb|AW279515.1|AW279515
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGNGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|209710099|gb|BW653554.1|BW653554
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|9564436|gb|BE473945.1|BE473945
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|105633553|gb|DW246916.1|DW246916
EST:     ACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGT
genomic: ACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGT
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|10708996|gb|BF008781.1|BF008781
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|27426228|gb|CA937748.1|CA937748
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|7925081|gb|AW831107.1|AW831107
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|26059546|gb|CA802460.1|CA802460
EST:     TGTACTTGGTTCCTTTTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|120530964|gb|EH259097.1|EH259097
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     TGTACTTGGTTCCACGTCACNTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|298168193|gb|HO013456.1|HO013456
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|23726214|gb|BU761091.1|BU761091
EST:     GACAACCGAGTTACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: GACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|21889419|gb|BQ742632.1|BQ742632
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|151394690|gb|EV264561.1|EV264561
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|16349170|gb|BI974765.1|BI974765
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGNGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
EST: gi|120530517|gb|EH258650.1|EH258650
EST:     TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGT                         GGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA
genomic: TGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcc ... ctttctacagGGATCTTGGTAACTCTAACCTATCTGGACATTTGGTACCTGAACTTGGGAA