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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatcttcttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag

Basic information

species Glycine max
transcript GLYMA02G43550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os09g05020.2 (Oryza sativa), 5'ss of exon 1
CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatct-tcttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag
| ||||||||||||||||| ||| ||||| | | ||||||||||||||||||   | ||||| |  | ||| || |  ||||  ||||||| ||| || |||  || | |      ||    | |||  ||| ||  ||    | |  |||| | ||  ||| |   ||      | | | | |                                                                                  
CGCTCAACTTCGCCATGGTGGATCATGGCGTATACCGCTCCGGCTTCCCCGACATCTCCAACCTGCCGTTCGTCGAGTCCCTTCGCCTCCGCTCCGTCCTgtgagtgcccgt---ccacctgctcttgccttgtccatcgagatggcgttgtcacctccatggtttcttgtgtccctccactcag---------------------------------------------------------------------------------

upper sequence: GLYMA02G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g10650.1 (Oryza sativa), 5'ss of exon 1
CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatctt-cttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag
| ||||||||||| ||||| ||  | ||||| |||||||||||||||||||   |||||||||||   |||||| |  | |||  |||||| |||||| |||  |   |    | ||  || | || |   || ||  || | |||| |  |  |  |   | |    ||| ||      ||| |   | | | ||   || |    | | | | ||| |  |  ||  |  | |    |  |                       
CGCTCAACTTCGCGATGGTCGACGACGGCATCTTCCGCTCCGGCTTCCCCGCGGCCGCCAACTTCCGGTTCCTCAAGTCGCTCAACCTCCGCTCCATCGTgtgaggaatt---tttctctctctctctctctagctagctacctcgtctgttgcatctaggggttgggttgggt--tgggttgct---tcgcgggt---gtgtggcgcgtgttcgtgtggttc--tgacgagggtgacgtcatcag--------------------

upper sequence: GLYMA02G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G134389_T01 (Zea mays), 5'ss of exon 1
CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatcttcttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag
| ||||||||||||||||| ||  | ||||| ||||||||||||||||| ||  ||||||| |||   |||||| |  |||||  |||||| |||||| |||  | | || | | ||  || |||    |    | ||| || | ||   | | |  ||  | | | | | || | |   ||| |   | |||  || ||                                                                 
CGCTCAACTTCGCCATGGTCGACGACGGCATATTCCGCTCCGGCTTCCCGGAGACCGCCAATTTCCGGTTCCTCAAGTCCCTCAACCTCCGCTCCATCGTgtaag-cgtctc-tttcgctctcccacgccgcgccgtct-ctcccttgaatcaccgcga--aagttgtcgcgtgctcg--tgaggcgctctga--aacgttctggcgcaccag----------------------------------------------------

upper sequence: GLYMA02G43550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0059g01400.t01 (Vitis vinifera), 5'ss of exon 1
CCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctcacatctcaatcacccttttcttatcttcttcttcgttttgttaacttgatgatgcttttgagtacccaattgatgaattgtgagtaaagtctcaatcttttccttgttgcacgctgttgctgattgtttttttgtttgattgggtgtttttatag
| ||||||||||||||||| ||||| ||||| |||||||| || || |||||  | ||||||||| ||||| | |||||||| || |||||||| |||||||  |||     || | |    |||||||         | |||||||||        |    || | ||||      || || | | ||      |  || |   | || |  || ||        ||  || |||  ||||  |||                  
CTCTCAACTTCGCCATGGTCGATAACGGCATCTTCCGCTCAGGTTTTCCCGACACAGCCAACTTCGCCTTCTTGCAAACCCTAGGTCTCCGTTCAATCATgtgagtct--gaatttgag---ccctttt---------tgcttcgtttta-------ggctctgatcttgaactgagaaatgttaattt------agggttttggttttctttttcttt-------tttttggttgaattttcatttag----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327904|gb|FK022127.1|FK022127
EST:     GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCAT                         ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
genomic: GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctc ... gtttttatagATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
EST: gi|9985819|gb|BE660046.1|BE660046
EST:     GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCAT                         ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
genomic: GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctc ... gtttttatagATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
EST: gi|298182544|gb|HO031279.1|HO031279
EST:     GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATTAT                         ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
genomic: GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctc ... gtttttatagATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
EST: gi|20813502|gb|BQ297980.1|BQ297980
EST:     GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCAT                         ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
genomic: GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctc ... gtttttatagATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
EST: gi|7926296|gb|AW832322.1|AW832322
EST:     GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCAT                         ATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC
genomic: GAACCCGCCAACTTCTCCTTCCTCCAAACCCTCGGCCTCCGTTCCATCATgtctgtcctc ... gtttttatagATATCTGTGTCCTGAGCCGTATCCGGAGGCCAATATGGAGTTCCTCAAGTC