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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAGgttcgttccttctctctcatcatcatctccgtctattttatgattccgcaatgcttgttctacagtaaaacttgaattcagttttcacttgcgaattttc...

Basic information

species Glycine max
transcript GLYMA02G43540.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAGgttcgttccttctctctcatcatcatctccgtctattttatgattccgcaatgcttgttctacagtaaaacttgaattcagttttcacttgcgaattttc
|||||||||| ||||||| ||| || |||||||||| ||||| ||||||||| |||||||||||||  |  | |||| ||| |||||  | |||||||||||| | |   ||  |||  | |      |    |   | |||  |  ||  ||  |    ||         | || |     |||    |||  ||  | 
CATGTGCATCGTCACGCATCTCAGCCACAAGAGCGACTGCCCCTGCTGCGGCAACTACCTCACCAAGGCGCAGCTCTACCCCAACTTCCTCCTCGACAAGgtttgcttgctcgttctgcttacacagccgagatggataatggattggccgtggcttccatattccgccgatcgattgggaattttggatgcctatccta

upper sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G104920_T01 (Zea mays), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAGgttcgttccttctctctcatcatcatctccgtctattttat-gattccgcaatgcttgtt-ctacagtaaaacttgaatt--cagttttcacttgcgaattttc
|||||||||| ||||||||||| ||||||||||||| ||||| ||||||||  | ||||| |||||  || | |||| ||| |||||  | || ||||||||| | | | | |      |  |   ||| ||   |||||| || | ||       || | | || | |||     || |  || ||      ||| | || | 
CATGTGCATCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTTGACAAGgttagctgcctgttc----tagttgcctcggttacttttatagaattcgtgtcatgtgctgcaactgcaaactgcaaactgacatttgctgaatgcaatttatg

upper sequence: GLYMA02G43540.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 1
CATGTGCATCATCACGCACCTCCGCAACAAGAGCGATTGCCCTTGCTGCGGCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAGgttcgtt-ccttctctctcatcatcatctccgtctattttatgattccgcaatgct-tgttctacagtaaaacttgaattcagttttcacttgcgaattttc
||||||| || ||||||||||| ||||||||||||| ||||| ||||||||  ||||||| |||||  || | |||| ||| |||||  | || ||||||||| | | |||  |||     | ||| || |   | |   ||   | |    ||||     |  ||  |   | |    | | | | || ||  |  ||   
CATGTGCGTCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCTGCTGCGGGCACTACCTTACCAAGGCCCAGCTCTACCCAAACTTTCTCCTTGACAAGgttggctgcctattctacttgcctcagctacccttctagaattcatgccatgtgctacaaacctcaaaatggcctttgctgaatgt-catttatgtgttgc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814676|gb|BI786951.1|BI786951
EST:     GCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAG                         CTTATTGTTATACGGTTTCTGTACCACATTTGTAGCTACTGAAGAAGACTT
genomic: GCGACTACCTCACCAACACCAACCTCTTCCCTAACTTGTTGCTCGACAAGgttcgttcct ... cgaaatgcagCTTATTGTTATACGGTTTCTGTACCACATTTGTAGCTACTGAAGAAGACTT