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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGCTTCTGGGGTTACTTGTAATTTGAGCATCAATTGGTATTACTCTTATAGTACATGGTTTGTGCCTGTTAAGACATCTGACAGAGATAGGGCAGAAgttcaggcatgaaattgatcctttattttttttttatttgttcaggacgtttttatttataagatttaaatttaaaatagggatgattctttttataaaa...

Basic information

species Glycine max
transcript GLYMA02G43390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43390.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0059g01680.t01 (Vitis vinifera), 5'ss of exon 1
AATAGCTTCTGGGGTTACTTGTAATTTGAGCATCAATTGGTATTACTCTTATAGTACATGGTTTGTGCCTGTTAAGACATCTGACAGAGATAGGGCAGAAgttcaggcatgaa--attgatcctttatttttttttta--tttgttcaggacgtttttatttataagatttaaatttaaaatagggatgattctttttataaaa-------
       || ||    ||||||||||||||||| |||||| |||| ||||||| ||| ||||| ||||| ||  | |  || || || |  |  ||  ||||||||| || |   | | ||  |  | ||    || |  |||||  |   |||| || |||    | |||    ||    | ||| |  || || || |           
------CTCAGGCACCACTTGTAATTTGAGCATGAATTGGCATTATTCTTATAATACTTGGTTCGTGCCCGTCGAAATTTCGGATAGTGGGACCGCCCAAGTTCAGgtataagtgagtaattttgaagttgggattgaattttgtcaatttcgttgttgtttt---gctttgtgatttg--ttgggtttgtttttgttttgggcatacgca