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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTAAGTGCCGCAGCAACTCTTTTTGTTTCTTCAGTTTGGTATAACCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattcttatcctacttctgattttgatgcattctcaattttatcttcgtaataggtttcgatcttcatcgtcctttatgcactttaatctaatta...

Basic information

species Glycine max
transcript GLYMA02G43080.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338889|gb|GR847606.1|GR847606
EST:     GGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|21602405|gb|BQ612736.1|BQ612736
EST:     GAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6567163|gb|AW234786.1|AW234786
EST:     AGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|193385523|gb|FK350759.1|FK350759
EST:     GAGGTCACGTTAGGTAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GAGGTCACG--AGG-AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7147515|gb|AW509437.1|AW509437
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6746785|gb|AW317241.1|AW317241
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4292427|gb|AI441903.1|AI441903
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6502344|gb|AW203717.1|AW203717
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9439986|gb|BE440497.1|BE440497
EST:     AGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7926117|gb|AW832143.1|AW832143
EST:     CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213600643|gb|DB968775.1|DB968775
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298176444|gb|HO026679.1|HO026679
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4397449|gb|AI496446.1|AI496446
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8282832|gb|BE020393.1|BE020393
EST:     CTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213601395|gb|DB968711.1|DB968711
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|12772358|gb|BG237285.1|BG237285
EST:     CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298180910|gb|HO022349.1|HO022349
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298171801|gb|HO021393.1|HO021393
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|11687722|gb|BF595398.1|BF595398
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10846499|gb|BF069362.1|BF069362
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6951685|gb|AW423753.1|AW423753
EST:     CTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|27426851|gb|CA938371.1|CA938371
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|20498572|gb|BQ273502.1|BQ273502
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|24136781|gb|BU927291.1|BU927291
EST:     CACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209711614|gb|BW671325.1|BW671325
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8827735|gb|BE211465.1|BE211465
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|6719056|gb|AW306703.1|AW306703
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209722813|gb|BW682886.1|BW682886
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13787407|gb|BG649999.1|BG649999
EST:     CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209712826|gb|BW684181.1|BW684181
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298190664|gb|HO032785.1|HO032785
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|193563438|gb|FK521327.1|FK521327
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13480539|gb|BG509882.1|BG509882
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|19934743|gb|BQ079773.1|BQ079773
EST:     CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8283599|gb|BE021158.1|BE021158
EST:     GTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|13252353|gb|BG363256.1|BG363256
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|8284693|gb|BE022235.1|BE022235
EST:     CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4397095|gb|AI496092.1|AI496092
EST:     CTAG-TTCACAATTTCCAAATG                         G-TAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213618083|gb|DB963716.1|DB963716
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|192323079|gb|FK017020.1|FK017020
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213612156|gb|DB956865.1|DB956865
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|16996882|gb|BM086254.1|BM086254
EST:     CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|7692719|gb|AW760819.1|AW760819
EST:     GCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|209714483|gb|BW684859.1|BW684859
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|4396174|gb|AI495171.1|AI495171
EST:     CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|208335308|gb|GE133337.1|GE133337
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10844949|gb|BF068138.1|BF068138
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|37993906|gb|CF805652.1|CF805652
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|10847614|gb|BF070266.1|BF070266
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|37993916|gb|CF805662.1|CF805662
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|254338581|gb|GR845724.1|GR845724
EST:     CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|9440022|gb|BE440533.1|BE440533
EST:     AGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: AGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|213611713|gb|DB960641.1|DB960641
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|298171044|gb|HO016076.1|HO016076
EST:     CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: CCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
EST: gi|19934720|gb|BQ079750.1|BQ079750
EST:     GCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATG                         GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG
genomic: GCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattc ... actgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTTAAGTGCCGCAGCAACTCTTTTTGTTTCTTCAGTTTGGTATAACCTTAGCCGAGGTCACGAGGAGCACTAGCTAGTTTCACAATTTCCAAATGgttcgtattcttatcctacttctgattttgatgcattctcaattttatcttcgtaataggtttcgatcttcatcgtcctttatgcactttaatctaatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA