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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCTGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttcacatccttccttaatctattttagctttcattgtttcgtatttaattactggatttgagacaatgtgtttttcattgaattag

Basic information

species Glycine max
transcript GLYMA02G42260.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42260.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S38_196V6.1 (Physcomitrella patens), 5'ss of exon 1
TGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCTGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttcacat--ccttccttaatctattttagct-ttcattgtttcgtatttaattactggatttgaga----caatgtgtttttcattgaattag---
|||||||||||| |||||||||||||||||| | ||  || | || ||||||||||||||||| ||||| |  ||     | ||  |||||  | | ||||| |||   || |  ||| |  |  ||  | |||||| ||  |  |||| |   ||   |  |||  || |       || |||  ||||||||| | |   
TGTCCTCATGGGCAAGAACACCATGATGAAGAGGTCCATCCGCATCCACGCTGAGAAAACCGGCAACAAGGATTACGAGGAGCTCCTCCCCGCCTTAGTCgtaagtgaaaccttacctacgcttgtcgctcttagctgtttgtaatttctttccta--catcggagctgggtgtccttatttgtgcttcattgaagttgtta

upper sequence: GLYMA02G42260.2 (Glycine max), 5'ss of exon 1
lower sequence: PP1S39_424V6.1 (Physcomitrella patens), 5'ss of exon 1
TGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCTGTCAGGATGCACGCTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttcacat--ccttccttaatctattttagctttcattgtt--tcgtatttaattactggatttgagacaatgtgtttttcattgaattag----
||| ||||||||||||||||||||||||||||||||  |  | || || || |||||||| |||||||| |  |||    | ||| ||||   |||||| |||||| |   ||  ||   |||  |        | | | | || |  |    | |  ||| ||  |||  |    |     ||| | | | | |     
TGTGCTCATGGGGAAGAACACCATGATGAAGCGCTCCATTCGTATCCATGCCGAGAAAACTGGAAACAAGGATTATGAGGAGCTTCTCCCTGCCCTTGTGgtgagtcttttatgaccactcttggtggcacagcgttcttagtgatagttcggtctgcttagtgttttttgggtcctactggttttaattactcatggca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309670|gb|FK002908.1|FK002908
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|10235634|gb|BE804522.1|BE804522
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAGGGGTGACCCTGAAG-AGGTCAGTGA
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACC-TGAAGGAGGTCAGTGA
EST: gi|9898939|gb|BE607907.1|BE607907
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|37997254|gb|CF808843.1|CF808843
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213615062|gb|DB962774.1|DB962774
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213593672|gb|DB971694.1|DB971694
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCTCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|37996490|gb|CF808079.1|CF808079
EST:     AAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: AAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|213611303|gb|DB972732.1|DB972732
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|7458651|gb|AW666101.1|AW666101
EST:     CTGAGAAAACCGGAGACAGTGCCTATCTCAACCTTATCCCCGTNCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|298198632|gb|HO040171.1|HO040171
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGA
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGA
EST: gi|213606530|gb|DB958998.1|DB958998
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
EST: gi|254344862|gb|GR851345.1|GR851345
EST:     CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTC                         GGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG
genomic: CTGAGAAAACCGGAAACAATGCCTATCTCAACCTTATCCCCCTCCTTGTCgtgagtttca ... attgaattagGGCAATGTGGGATTGATTTTCACCAAGGGTGACCTGAAGGAGGTCAGTGAG