Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCTGTCCCCATTGGATGGTCGTTATTGGAGCAAAGTTAAGGAACTTGCTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtacccttttgttaattctcctcttttctgatgcccttttgattaaagtacctttttttttttctgttttgaattttctcttctgggtattgttgctctctgatgttttgtgtgtgtgtgtgtgtgtgcttcctgttag

Basic information

species Glycine max
transcript GLYMA02G42130.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42130.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 2
GGCTCTGTCCCCATTGGATGGTCGTTATTGGAGCAAAGTTAAGGAACTTGCTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtacccttttgttaattctcctcttttctgatgcccttttgattaaagtacctttttttttttctgttttgaattttctcttctgggtattgttgctctctgatgttttgtgtgtgtgtgtgtgtgtgcttcctgttag
 ||| |||| || |||||||||||||||||||| ||||| |||||  | |||||||   |||||||||||||| ||||| ||||||| ||||||||||||||||   |||  |      |||| | | |  || | | || ||| |  |||||| | |  |      || ||    ||   | ||    || |       |  |||                                 
AGCTTTGTCGCCTTTGGATGGTCGTTATTGGAGTAAAGTCAAGGACTTGGCTCCTTACATGAGTGAATATGGCCTAATCCACTTTCGAGTTCTTGTTGAGgtactactttaattcaaaacctcctatttagtgtcgtatt-atttagataccttctctactcatg--ttagagcagtcaactttg----ttatcatgtattagtgta--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700954|gb|BW661321.1|BW661321
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|209708014|gb|BW662156.1|BW662156
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|192300374|gb|FG988821.1|FG988821
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTTCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTT-CC
EST: gi|213594177|gb|DB963774.1|DB963774
EST:     TCCNNNNNNNGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: TCCTTTTTT-GAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|254328979|gb|GR833351.1|GR833351
EST:     CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: CTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
EST: gi|209705022|gb|BW667720.1|BW667720
EST:     TCCNNNNNNNGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAG                         ATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC
genomic: TCCTTTTTT-GAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGgtaccctttt ... ttcctgttagATAAAATGGTTGCTGCAGCTGTCTGTGATTCCTGAAATCGTTGAGGTTCCC