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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCCGAGTCTGAGATCAAGCAACTCTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctcctttactcccctcaatttgctccctcttttgtgtttagggtttagaaatgcttctgggtgtcctttgtttgttgcaag...

Basic information

species Glycine max
transcript GLYMA02G41890.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 1
CTCTCCGAGTCTGAGATCAAGCAACTCTGCGTCGCTTCCAGAGACATCTTCATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttttgctttcttctcctttactcccctcaatttgctccctcttttgtgtttagggtttagaaatgcttctgggtgtcctttgtttgttgcaag---
||||| |||   |||||||||||||||||||| || ||||| || || ||  || | ||  ||||| | || |||||||||||||| ||||||||||||||||    |||   ||  |||   |  | ||   |        |  || ||| |||  |  |||||   |||| || || || ||  ||   | |   | |   
CTCTCTGAGAACGAGATCAAGCAACTCTGCGTTGCATCCAGGGAAATTTTTCTTCAGCAATCCAATCTTCTCGAACTCGAAGCCCCTATCAAGATTTGTGgtatgt-tttgatttgattcgattcgattctttttttccctttttctttttggtgggtgtggtttc--aatggttgtgagtttcgattaggtttccgatgttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13479796|gb|BG509139.1|BG509139
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAG-ATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
EST: gi|298181712|gb|HO025887.1|HO025887
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGATGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTCGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
EST: gi|298170561|gb|HO019185.1|HO019185
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
EST: gi|208167315|gb|GD958737.1|GD958737
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAGGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
EST: gi|192325314|gb|FK017130.1|FK017130
EST:     CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTG                         GTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG
genomic: CATTAACCAGCCCAATTTGCTTGAACTCGAAGCCCCCATCAAGATTTGTGgtaccccttt ... gctttttcagGTGACATTCATGGGCAGTACAGTGATTTGTTAAGGCTATTTGAGTATGGGG