Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAAGCAGAAGAAGCCGAAGAAGCCGAAGGTGACGGTGGCCGAAGCTGCTTCCGGAATCAGCGCCGATGATCTCGACGCGTTTCTCGCTGAAATTACCgtgagtgtttcaattattgatcttctgcgattgcgattcgttgaatgtgagagagaaataaaaaatgaatcgcgtttgcgcag

Basic information

species Glycine max
transcript GLYMA02G41270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G41270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g03760.2 (Oryza sativa), 5'ss of exon 1
GGCGAAGCAGAAGAAGCCGAAGAAGCCGAAGGTGACGGTGGCCGAAGCTGCTTCCGGAATCAGCGCCGATGATCTCGACGCGTTTCTCGCTGAAATTACCgtga--------gtgtttcaatta-ttgatcttctgcgattgcgattcgttgaat-gtgagagagaaataaaaaatgaatcgcgtttgcgcag--------
| | |||  |||||||||||||||||| ||||||||||| ||||| || ||  |    |||  ||||||  | ||||  |||  |||||   | ||  | || |         ||||||  | | ||  ||||| |  || |  |    | || | ||  |      || | |  |   ||   ||||   ||        
GCCCAAGGTGAAGAAGCCGAAGAAGCCCAAGGTGACGGTCGCCGAGGCGGCCGCTCTGATCGACGCCGAGAACCTCGCGGCGCATCTCGTGCAGATCTCGgtaatacccgtcctgtttcgctgaattcctcttcggaaatcgtcagatctcgacttgtttggactggatcatatttttgtctt-tttgttaaggatcggat