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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttcttttaacatatcctagcttcacctttctcactgtcaattaatctcatgcatatatgtgattaaatttcgaacaataatatatattggcat...

Basic information

species Glycine max
transcript GLYMA02G40000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40000.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g02100.1 (Oryza sativa), 5'ss of exon 1
TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttcttttaacatatcctagcttca-cctttctcactgtcaattaatctcatgcatatatgtgattaaatttcgaacaataatatatattggcat
    || | ||||  ||| |||||||    ||| || || || ||| |||||||||| || || |||||||| || || |||||||||||||||||||||| | || | |        ||      ||  |   |||||||||   || ||   ||| | |   |  |  | |   |||  |||||               
----TCCACCATCCGAACAGCGGTGAGATCTGCCGTAGCAAAGGAGAACCGCATGGGTGCATCATTGCTCCGCCTCCACTTCCATGACTGCTTTGTCAATGAAAgtgtccagaacctgtacagatactcaagtttttctcacttctaagta---tcaagtactaacct--tcagtattctgacaatgcag-----------

upper sequence: GLYMA02G40000.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os12g02060.1 (Oryza sativa), 5'ss of exon 1
------------------------------------------------------------------------------TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttcttttaacatatcc-tagcttcacctttctcactgtcaattaatctcatgcatatatgtgattaaatttcgaacaataatatatattggcat
                                                                               ||  | | ||||  ||  || ||||    |||  | || |  ||| |||||||||| || || |||||||| || || ||||| |||||||||||||||| | || | ||        |    ||     |  |||||||||   || ||   | | | |   |  |  | |   |||  |||||               
CATTGCCTTGTTATTTGCTGCAAACTTGGTGTCAGCTCAGCTTAGCGCAAATTTCTATGACAAATCATGCCCTAATGCACTGCCCACCATCCGAATAGCCgtgagatctgccatcgcaagggagaaccgcatgggtgcatcattgctccgcctccacttccacgactgctttgtcaatgaaagtgtcctgaacctgcagagatattcaaaattttctcacttctaagta---ttacgtaataacct--tcagtattctgacaatgcag-----------

upper sequence: GLYMA02G40000.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g55740.1 (Oryza sativa), 5'ss of exon 1
TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttcttttaacatatcct----agcttcacctttctcactgtcaattaatctcatgcata---tatgtgattaaatttcgaacaataatatatattggcat
 |||   |||||| || | || || |  |  || ||| | || |||   ||||||||||| ||  |||| || || |||||||| |||||||||||||||||| || | |    |||  | |||    || |     || ||    ||    || ||  |    |    ||  || || |||||||||      ||           
GCTCGACATCATCGAATCTGCCGTCAGAGACGCCGTTTCCAAGGAGTCTCGCATGGGAGCTTCGCTGCTGCGCCTCCATTTCCACGACTGCTTTGTCAATgcaagtct-cacacaactcacccttttaagttcagttttccttctcgttttctagtccgacctttgaagtagatgtttcaatttcgaaattcgctagtcgc------

upper sequence: GLYMA02G40000.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G443885_T01 (Zea mays), 5'ss of exon 1
TCTCTCTATCATCAAAACGGCGGTGATTGGTGCGGTTGCGAAAGAGCACCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttct-tttaacatatcctagcttcacct---ttctcactgtcaattaatctcatgcatatatgt-gattaaatttcgaacaataa-tatatattggcat------------------------------------------------------------------------------------------------------
           || |  | || ||||  | ||| ||  | || |||  ||||||||| |||||| | ||||| || |||||||| |||||||||||||||||| ||    | |   |||  ||  |  |||        |  |||| |   ||  || |||| |  || ||  |    ||  |   ||  |  ||    ||| |                                                                                                        
-----------TCGAGTCCGCAGTGAGAGCTGCCGTCTCCAAGGAGTCCCGCATGGGGGCCTCCCTCCTCCGCCTCCATTTCCACGACTGCTTTGTCAATGCAAGTGCCATgtgccacacctctaaatttccttcagccttccacttttgtttt-tcccatgaagttacgttaaactgatgccatgcatgagctagccgttgactgaactgacgggcttcggttagatcttctactgttttgggcggagtgtttagaatcttgcttattaggcatagcacatcatatgttggttcagacattcagtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098226|gb|HO759967.1|HO759967
EST:     GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAAT                         GGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG
genomic: GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttc ... aaacttgtagGGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG
EST: gi|308098469|gb|HO760210.1|HO760210
EST:     GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAAT                         GGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG
genomic: GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttc ... aaacttgtagGGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG
EST: gi|192303757|gb|FG998683.1|FG998683
EST:     GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAAT                         GGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG
genomic: GCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGACTGCTTTGTCAATgcacgttttc ... aaacttgtagGGATGTGATGCATCTGTTCTGTTGGATGACACTTCAACCTTTACTGGAGAG