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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGCAGCAATTCACTTCGACAACTGGCTTCTCTGGCTAATCTATTGCCCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataatttttgtgtttcttactcttttttttttttttttgtttatgatatgaatctcacacattgttctgttatgtcatttcttcttcatttggctttagacaacttaaatttgagatctttattatgtttttgcttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacag

Basic information

species Glycine max
transcript GLYMA02G39230.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTGCAGCAATTCACTTCGACAACTGGCTTCTCTGGCTAATCTATTGCCCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataatttttgtgtttcttactcttttttttttttttttgtttatgatatgaatctcacacattgttctgttatgtcatttcttcttcatttggctttagacaacttaaatttgagatctttattatgtttttgcttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacag
  |  || || ||| |||  |||| |||| |  | |||| | | || ||  |    || || ||||||||||||||  | ||||||||||||||||| ||||||| | |    |  || |  |  || ||| | |||  ||| | | || |||    | | | |       || |     || | ||| | |||    | |     |||                                                                                   
CAGTGGCTGCCATTTACTCGGACAGCTGGTTGGTTTGGCCACTGTACTGGGCTGCCCAGGGGACAATGTTCTGGGCATTGTTTGTTCTTGGACATGACTGgtaatcact----taattttagccattatttctgtttggttgctaa-gaaatggtggtaaaataaaagaaagtaaaactcttacctctactttt----tcaagtttctt-----------------------------------------------------------------------------------

upper sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g06720.t01 (Vitis vinifera), 5'ss of exon 2
TGGCTGCAGCAATTCACTTCGACAACTGGCTTCTCTGGCTAATCTATTGCCCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataatttttgtgtttcttactcttttttttttttttttgttta-tgatatgaatctcacacattgttctg-ttatgtcatttcttcttcatttggctttag----acaacttaaatttgagatctttattatgtttt-tgcttata-tggtaaagtgattcttcattatttcattcttcattgattgaattgaacag
     ||||| ||  |||| ||||  ||| |  | |||| | |||| ||  |    || || |||||||||||||| || ||||||||||||||||| ||||||| |      || |  |||| |||| |  ||  ||  ||   | || ||  ||    | | |  |      ||       | |||||||| ||   || ||      ||  ||| |||    |  || || ||||   ||||| |     | || |      || ||  || ||| || |||  |||||        
CTATAGCAGCTATATACTTGGACAGATGGGTGGTTTGGCCACTCTACTGGGCTGCCCAGGGAACAATGTTCTGGGCCCTGTTTGTTCTTGGACATGACTGgtaatcac----atggtctttacactttctgcttggttgctgagaaatggtagtaaaagaaaagaaagcaaaacttgaaatcctacttcttcagtttctttcagtaacgtaatataattttactttgcttcttttgttgagtgcttttggcaatgaacttgaatgtcctttcttgattttt-attttttgaag-------

upper sequence: GLYMA02G39230.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ20170 (Selaginella moellendorffii), 5'ss of exon 1
TGGCTGCAGCAATTCACTTCGACAACTGGCTTCTCTGGCTAATCTATTGCCCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataatttttgtgtttcttactcttttttttttttttttgtttatgatatgaatctcacacattgttctgttatgtcatttcttcttcatttggctttagacaacttaaatttgagatctttattatgtttttgcttatatggtaaagtgattcttcattatttcattcttcattgattgaattgaacag
  ||||  ||   | ||||  | || |||||  |||||| | |||| ||  |    |||||||| |||||||||||||||||||| || || ||||| ||||||   ||| | |       |   ||||| ||| |   |  |    |   |  |||                                                                                                                                       
CTGCTGGTGCTGCTTACTTGAATAATTGGCTCGTCTGGCCACTCTACTGGGCTGCCCAAGGCACGATGTTCTGGGCTCTCTTTGTGCTCGGCCATGACTGgtaagtttttctctcccagcaatgttttttctttctcgatcttacgcgtctttgatcag-------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393687|gb|EV263562.1|EV263562
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|151407473|gb|EV277288.1|EV277288
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|298197456|gb|HO044935.1|HO044935
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|192305128|gb|FG994678.1|FG994678
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|151394272|gb|EV264143.1|EV264143
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|298189379|gb|HO037782.1|HO037782
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
EST: gi|213600296|gb|DB955878.1|DB955878
EST:     CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTG                         TGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA
genomic: CCCATTCAAGGCACAATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGgtaataattt ... aattgaacagTGGCCATGGAAGCTTTTCAGATAGCCCTTTGCTGAATAGCCTGGTGGGACA