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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctcttcagcttcgatttcgcattcctttggtttaaccttcttaaacatttgttcttgtttttttctttggttcttatgttgttgttgtcgtgtgtcgtgtaattgtag

Basic information

species Glycine max
transcript GLYMA02G35500.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4307640|gb|AI444076.1|AI444076
EST:     TGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: TGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|7478670|gb|AW666357.1|AW666357
EST:     CTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: CTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|6071298|gb|AW100685.1|AW100685
EST:     GTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: GTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|23733288|gb|BU764826.1|BU764826
EST:     GTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: GTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|17519530|gb|BM188572.1|BM188572
EST:     CCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: CCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|298194398|gb|HO041046.1|HO041046
EST:     ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|120491259|gb|EH219426.1|EH219426
EST:     TTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: TTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|192328211|gb|FK020444.1|FK020444
EST:     TCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: TCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|192313774|gb|FK007646.1|FK007646
EST:     ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|7588724|gb|AW704513.1|AW704513
EST:     GTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: GTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|151402809|gb|EV272622.1|EV272622
EST:     ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|192313831|gb|FK007647.1|FK007647
EST:     ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: ATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
EST: gi|6668126|gb|AW279577.1|AW279577
EST:     GCGTCGTTACCATG                         CCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC
genomic: GCGTCGTTACCATGgttcgctctt ... gtaattgtagCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTC