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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaagttatcatgtactttaatttcacttattgtatgataagattggatggtgttgaacat...

Basic information

species Glycine max
transcript GLYMA02G34060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaagttatcat-----gtact--ttaatttcacttattg-tatgataagattggatggtgttgaacat-----
 ||||||||| ||||||||||||| |||||||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||  |||  ||  |  |   ||||||| |            |  |||  |      | |||  ||  |||      | | ||   ||| | ||| |    |||||        
TGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTTTACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGATAAGgtttgtttgttcatcatct-tgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacag

upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaa--gttatcatgtactttaatttcacttattgtatgataagattggatggtgttgaacat--
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| | |  ||| |  | | | |  | |||  ||  || |  |  ||  |  ||||     |  | |    | | |   ||||||  |||  | |||||  |  
GGAGAAGTATGTGATTCCTGGTGGGAGCTCTGGGTTCTACCAGAGAGATGGGTATACGTTTGATGTTGGGTCTTCTGTGATGTTTGGTTTCAGCGATAAGgtcggct--ttaataattattatattccttcttgaattatacactgtccttttgtatcagcaactaaaaactaggagtttaagat--gatcatattgaaattga

upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ24009 (Selaginella moellendorffii), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaagttatcatgtactttaatttcacttattgtatgataagattggatggtgttgaacat
 |||||||| |||||||||||||||||  ||||||||| | || |||||||||| ||||| ||||| || || || ||||||||||||||||| || ||||  ||       | |   ||  |  ||||||    |   |  |  | |  | |  | |   | ||   |                               
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaag-------tggacaaagtttgttcttgagaagcgttccaactcttttttgttcttgctccatccag------------------------------

upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ21638 (Selaginella moellendorffii), 5'ss of exon 1
GGAGAAGTATGTGATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGAGATGGCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatttattggtgaatgtgattcttgctgtgttgtgaagttatcatgtactttaatttcacttattgtatgataagattggatggtgttgaacat
 |||||||| |||||||||||||||||  ||||||||| | || |||||||||| ||||| ||||| || || || ||||||||||||||||| || ||||  ||       | |   ||  |  ||||||    |   |  |  | |  | |  | |   | ||   |                               
AGAGAAGTACGTGATTCCTGGTGGAAGTGCTGGGTTTTTCAAGCGAGATGGCTACACTTTCGATGTTGGATCGTCCGTCATGTTTGGTTTCAGCGACAAGgcaag-------tggacaaagtttgttcttgagaagagttccaactcttttttgttcttgctccatccag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348315|gb|BI973910.1|BI973910
EST:     GCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAG                         GGTAATCTCAATTTGATAACT
genomic: GCTATACTTTTGATGTGGGGTCTTCTGTCATGTTTGGTTTCAGTGATAAGgtcagttatt ... atttgtgtagGGTAATCTCAATTTGATAACT