Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAACAAGAGATTCAAGCATTTCAGCCTTACCCTGGGATGCTCCATGAACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccctctctcaatttccccatttctcattccaatttaacctaattttgcacttcctcgattgattgacccggctattgtgctttgaatgaataatag

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33350.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g09010.t01 (Vitis vinifera), 5'ss of exon 1
TTACAACAAGAGATTCAAGCATTTCAGCCTTACCCTGGGATGCTCCATGAACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccctctctcaatttccccatttctcatt-ccaatttaacctaattttgcacttcctcgattgattgaccc----ggctattgtgctttgaatgaataatag
|||||| ||||||||||||||||||||||  ||||| || || |||||||  || ||| | ||||| |||||   ||||||||| ||||||||||||||||| ||||||||     ||||||||||||| ||    | |         |||   || |   |   |||||| |  |    || | ||    ||      | ||    
TTACAATAAGAGATTCAAGCATTTCAGCCCAACCCTCGGCTGTTCCATGACTTTTCACGTTTACTTTCCTCCTCTTCCTTCTCCTTCTCACAAATTCCCTgtaagtccctcc----atttccccatttcgcaacatctaccctctgctattactcattgtttgagttgattcattccctagggttttacaattcttgcaagtat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|7924639|gb|AW830665.1|AW830665
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298169342|gb|HO020702.1|HO020702
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|13251945|gb|BG362848.1|BG362848
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|14990995|gb|BI316668.1|BI316668
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCA                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|21994919|gb|BQ786447.1|BQ786447
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|16347920|gb|BI973515.1|BI973515
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     TCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: TCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|33390499|gb|CA853694.1|CA853694
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|193629440|gb|FK574916.1|FK574916
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTC
EST: gi|12774209|gb|BG239136.1|BG239136
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298198180|gb|HO039719.1|HO039719
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCGCCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     ACTTCCGCATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     ACTTCCACATCTACTTCCCTCCATCCCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298171089|gb|HO016121.1|HO016121
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298191019|gb|HO038498.1|HO038498
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|208263915|gb|GE061627.1|GE061627
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298166560|gb|HO009999.1|HO009999
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298193463|gb|HO033897.1|HO033897
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|298178548|gb|HO024283.1|HO024283
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
EST: gi|192314972|gb|FK010790.1|FK010790
EST:     ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCT                         GTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC
genomic: ACTTCCACATCTACTTCCCTCCATCTCCTTCTCCCTCTCACAAATTCCCTgtgagtccct ... tgaataatagGTGCTGTACTTTCTCTCTGGCCTCACTTGCACCGACGAGAACTTCATATTC