Sequence
atgc intronic sequence ATGC exonic sequenceATCACAGTGCCAGTGATAATCTCTTTGGCAAAGGGTATAGAGGCTGCATTAGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAAgtaagatttttcttatttttatgagttatcttttctccattattctggcttctttcttatacttcaaaggccagactttcctcatacatttgatacaata...
Basic information
species | Glycine max |
transcript | GLYMA02G33340.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G41540.2 (Arabidopsis thaliana), 5'ss of exon 2
ATCACAGTGCCAGTGATAATCTCTTTGGCAAAGGGTATAGAGGCTGCATTAGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAAgtaagatttttcttatttttatgagttatcttttctccattattctggct---tctttcttatacttcaaaggccagactttcctcatacatttgatacaata
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ATAACGGTTCCGATTATTATCTCTCTGTCAAAGGGTATTGAAACTGCTCTTGAACCAGTTCCACATATCATAACTCCAACAAAGATGATTCATCAAGCAAgtaagctttttcttcttccttttgctccttttatattgagtctattgacacaatcttgcttagttttcttgaattggttcttactttggtgtttgtggtag--
upper sequence: GLYMA02G33340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g09000.t01 (Vitis vinifera), 5'ss of exon 1
ATCACAGTGCCAGTGATAATCTCTTTGGCAAAGGGTATAGAGGCTGCATTAGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAAgtaagatttttcttatttttatgagttatcttttc----tccattattctggcttctttcttat-acttcaaaggccagac-tttcctcatacatttgatacaata----------------------------------------------------
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ATTACAGTTCCCATCATTATTTCTTTGTCAAAGGGTATAGAGGCTGCTCTAGAACCCCTCCCACATATCATCACTCCCACACAAATGATTAACCGAGCAAgtaagggcctttgttttactatttattggtttctcaaatcttggctctatgttttgtttcttgtgaattaaaagtccatatatttcttggaacatttgccttaagaagagcttttatttctatgatctaagccttttttatatatccttgctgggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7795871|gb|AW781268.1|AW781268EST: AGAGCCTGTTCCTCATATTATAACTCCCACAGTAATGATTAACCAAGCAA CTGGAGTGCCTATGGAGAACATACTGTATCTT
genomic: AGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAAgtaagatttt ... actttgacagCTGGAGTGCCTATGGAGAACATACTGTATCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCACAGTGCCAGTGATAATCTCTTTGGCAAAGGGTATAGAGGCTGCATTAGAGCCTGTTCCCCATATTATAACCCCCACAAAAATGATTAACCAAGCAAgtaagatttttcttatttttatgagttatcttttctccattattctggcttctttcttatacttcaaaggccagactttcctcatacatttgatacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA