Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTGCCCAAATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGgtccgagctatatccaatattacctttgatgcattcatatatatgaatgtatctggtgttgctgttcagaatttcattaagtgtgaaatataggttgttgtccttttctttcatttaaaaaaattgggtgttcattttatgtgtatctccag
Basic information
species | Glycine max |
transcript | GLYMA02G32100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTGCCCAAATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGgtccgagctatatccaatattacctttgatgcattcatatatatgaatgtatctggtgttgctgttcagaatttcattaagtgtgaaatataggttgttgtccttttctttcatttaaaaaaattgggtgttcattttatgtgtatctccag
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AGGGACTGAAATCTGGAGAATTGAGAATTTTGAGGCAGTTCCTGTACCAAAGTCTGAGCATGGAAAGTTCTATATGGGAGATACTTACATTGTCTTGCAGgtttgtaat--------tcttttctttgctcttttctttcctctg----ttttctgtgtt-ctata-aaaatat--ttagttatgatctcttacaagacagactaacttatgtttgagaaatgtta--tcttccctttgcgcag--------
upper sequence: GLYMA02G32100.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 2
AGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTGCCCAAATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGgtccgagctatatccaatattacctttga--tgcattcatatatatgaatgtat---ctggtgttgctgttcagaatttcattaagtgtgaaatataggttgttgtccttttctttcatttaaaaaaattgggtgttcattttatgtgtatctccag
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TGGCACCGAAATATGGAGAATTGAGAACTTTCAGCCAGTTCCTTTGCCAAAGTCCGATTATGGTAAATTCTACACAGGGGACTCTTACATTGTCCTGCAGgtgcatgtagtcttcaactttctcttttgcttgagttctactatctcggctcattcccccacatgaatgttcaaatttcaatt-----taaacttcctgcggttg----------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22931110|gb|BU548249.1|BU548249EST: AATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAG ACAACTCAAGGCAAAGGAAGCACTTATTTTTATGATTTACACTTTTGGATT
genomic: AATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGgtccgagcta ... gtatctccagACAACTCAAGGCAAAGGAAGCACTTATTTTTATGATTTACACTTTTGGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACTGAAATATGGAGGATTGAGAATTTTCAGCCAGTTCCATTGCCCAAATCTGAGTATGGGAAATTCTACATGGGAGATTCGTACATCATCTTGCAGgtccgagctatatccaatattacctttgatgcattcatatatatgaatgtatctggtgttgctgttcagaatttcattaagtgtgaaatataggttgttgtccttttctttcatttaaaaaaattgggtgttcattttatgtgtatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT