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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAACAACTCAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcggatctcaattttccattcaaaagcattttttctttcttctgtatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcag

Basic information

species Glycine max
transcript GLYMA02G15540.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15540.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g66960.1 (Oryza sativa), 5'ss of exon 1
GCGGAACAACTCAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattc-catttcggatctcaattttccattcaaaagcattttttctttcttctgtatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcag
||||| |   || |  |  | || |||||| | || || |||||||| |||||| | ||||||||||||||| | ||| | |||| |||||||||| ||||| |      |  |  |   ||    | ||||  |   ||   |  | |||    | |       ||   |   |   |  |  | |   ||  |    |                                                                            
GCGGAGCGGTTCGGGGCGAGGGAGTGCGAGGAGCTGGGGTTCACCGGTCTCGCCCTCTGCTCCGACTGCAACGCCCTCGCGGAGTTCGTCAAGGACCAAGgtatgggggtacctgtggattcctcctcccatgtagctgctgctagtatttgcgatctgaaccgggaacgcgtaggagcctttcgga-tgcgttttttctt---------------------------------------------------------------------------

upper sequence: GLYMA02G15540.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G109429_T02 (Zea mays), 5'ss of exon 1
GCGGAACAACTCAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcggatctcaattttccattcaaaagcattt--tttctttcttctg--tatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcag
|  || |  ||| |  |  | || |||||| | || || |||||||| |||||  | ||||||||||||||| | |||||||||| |||||||||| |||||     ||   |||   |||       |      | ||| |   |    | || |||  |  |  | |  ||  |  |  | |   | | ||||     |  ||                                                                          
GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgc-ccggatcgtccctccggcgcgcgacaccacgcactcggtgcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgt----agccg--------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9440335|gb|BE440841.1|BE440841
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208229771|gb|GE026094.1|GE026094
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|13181092|gb|BG352432.1|BG352432
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCC
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193661901|gb|FK602687.1|FK602687
EST:     ACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGA-TGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: ACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298163443|gb|HO012176.1|HO012176
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|17519610|gb|BM188652.1|BM188652
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298167322|gb|HO010761.1|HO010761
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298199552|gb|HO042915.1|HO042915
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCTATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193624115|gb|FK576053.1|FK576053
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208170435|gb|GD969670.1|GD969670
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGG
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGG
EST: gi|192332058|gb|FK026338.1|FK026338
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151397361|gb|EV267234.1|EV267234
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTCGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192297819|gb|FG988317.1|FG988317
EST:     CACCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|193639828|gb|FK587105.1|FK587105
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151394659|gb|EV264530.1|EV264530
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192330489|gb|FK022662.1|FK022662
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCTA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298194670|gb|HO043142.1|HO043142
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTGCGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298192558|gb|HO036640.1|HO036640
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|15203957|gb|BI426734.1|BI426734
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|208103487|gb|GD903114.1|GD903114
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298176175|gb|HO015580.1|HO015580
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|120492950|gb|EH221117.1|EH221117
EST:     AGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: AGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151411054|gb|EV280865.1|EV280865
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298199406|gb|HO042769.1|HO042769
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|105632136|gb|DW246331.1|DW246331
EST:     ACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: ACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|207796817|gb|GD768879.1|GD768879
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAA
EST: gi|298174830|gb|HO017939.1|HO017939
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|151408591|gb|EV278399.1|EV278399
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298182792|gb|HO031527.1|HO031527
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCGATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298166885|gb|HO010324.1|HO010324
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192331291|gb|FK021002.1|FK021002
EST:     CGCCTCGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGAGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|192332059|gb|FK026339.1|FK026339
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|209696839|gb|BW680461.1|BW680461
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|298197039|gb|HO041726.1|HO041726
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
EST: gi|120493042|gb|EH221209.1|EH221209
EST:     CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAG                         AGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA
genomic: CGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattcca ... tcggttgcagAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCA