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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGATGATGTTGTTCCCAAAACTGCTGAGAATTTCAGAGCCCTATGCACTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttttattctttctaccttttatctctcactttttgaacatactcatcttctatatctattcaattctattttctcctcttgaagactgtttct...

Basic information

species Glycine max
transcript GLYMA02G15250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G15250.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S46_106V6.1 (Physcomitrella patens), 5'ss of exon 2
TTATGATGATGTTGTTCCCAAAACTGCTGAGAATTTCAGAGCCCTATGCACTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttttattctttctaccttttatctctcactttttgaacatactcatcttctatatctattcaattctattttctcctcttgaagactgtttct--------
||  |  |||||||| || |||||||||||||||||  | ||||| ||||| || ||||||||||| ||   ||   ||||    ||| | |||| ||| ||      | |||||       |||| ||     ||       || ||   ||||  | |    | |   |  ||  |  ||||     | | || |  |        
TTTCGCGGATGTTGTACCGAAAACTGCTGAGAATTTTCGCGCCCTGTGCACGGGAGAGAAAGGCATCGGGAAAATCTCTGGGCGCCCCTTGCATTACAAAgtatggcatctattcagctcctctttcattcacgac-------acgtatggatctcatgtcggcagttt-tcataggtcgtcctacgtcaaaatgctcatcggattac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407281|gb|EV277096.1|EV277096
EST:     CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAG                         GGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
genomic: CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttt ... gtattatcagGGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
EST: gi|298186510|gb|HO037143.1|HO037143
EST:     CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAG                         GGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
genomic: CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttt ... gtattatcagGGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
EST: gi|192297055|gb|FG990326.1|FG990326
EST:     CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAG                         GGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
genomic: CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttt ... gtattatcagGGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
EST: gi|192323805|gb|FK018586.1|FK018586
EST:     CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAG                         GGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
genomic: CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttt ... gtattatcagGGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
EST: gi|120495931|gb|EH224098.1|EH224098
EST:     CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAG                         GGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT
genomic: CTGGTGAGAAAGGCATTGGTTCAAATACTGGAGTGCCCCTTCATTTCAAGgtcatctttt ... gtattatcagGGATCTTGCTTTCATCGTGTTATTAAAGGCTTCATGATTCAAGGAGGTGAT