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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAACAGGATACCTGCTCCGAGGCTCTTGAAGCTGACTCCTCTGGATTCGCATTTGGCTGGTGCGAACAATAAGTTTCACAGTGGCCATTTTTCGTGGgtaagtttgattcgccattgttgttgttgttgacttgttgtatgtccattatgattttaattcttgatacttatccatgcagctacttgtatatgtcaat...

Basic information

species Glycine max
transcript GLYMA02G14960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14960.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0063g00480.t01 (Vitis vinifera), 5'ss of exon 1
GGGGAACAGGATACCTGCTCCGAGGCTCTTGAAGCTGACTCCTCTGGATTCGCATTTGGCTGGTGCGAACAATAAGTTTCACAGTGGCCATTTTTCGTGGgtaagtttgattcgccattgttgttgttgttgacttgttgtatgtccattatg-attttaattcttgatacttatccatg-cagctacttgtatatgtcaat
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GGGAAATAAGATCCCAGCTCCCAGACTGTTGAAGCTGACTCCTGTTGATTCACATATGGCTGGGGTGGATAATAAATTTCACGGTGGCCAATTTTCATGGgtaagtt-gattcatgtcttccatatttcatgctatgtcttgcttgatccatacatttctatcttggtcatttaaatttggctgataagagcttacatgat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600996|gb|DB983671.1|DB983671
EST:     TGGTGCGAACAATAAGTTTCACAGCT-TCAATTTTACTTGG                         GTCACTGAGAATGGTAAACAAGAACGCCACCTCGTTGCGACTGTGGGCAAG
genomic: TGGTGCGAACAATAAGTTTCACAG-TGGCCATTTTTCGTGGgtaagtttga ... tgtctttcagGTCACTGAGAATGGTAAACAAGAACGCCACCTCGTTGCGACTGTGGGCAAG
EST: gi|209724520|gb|BW658379.1|BW658379
EST:     CGCATTTGGCTGGTGCGAACAATAAGTTTCACAGTGGCCATTTTTCGTGG                         GTCACTGAGAATGGTAAACAAGAACGCCACCTCGTTGCGACTGTGGGCAAG
genomic: CGCATTTGGCTGGTGCGAACAATAAGTTTCACAGTGGCCATTTTTCGTGGgtaagtttga ... tgtctttcagGTCACTGAGAATGGTAAACAAGAACGCCACCTCGTTGCGACTGTGGGCAAG