Sequence
atgc intronic sequence ATGC exonic sequenceGGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgttagccatcttacaattagtcattttaatgcaccagttagttccactgttttattaacataaaaagtattaacacatgtgacattgtaaacaactttct...
Basic information
species | Glycine max |
transcript | GLYMA02G14880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14880.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G19290.2 (Arabidopsis thaliana), 5'ss of exon 2
--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgttagccatcttacaattagtcat-tttaatgcacc--agttagttccactgttttattaacataaaaagtattaacacatgtgacattgtaaacaactttct
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ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacag---------------
upper sequence: GLYMA02G14880.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G19290.3 (Arabidopsis thaliana), 5'ss of exon 2
--GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgttagccatcttacaattagtcat-tttaatgcacc--agttagttccactgttttattaacataaaaagtattaacacatgtgacattg-taaacaactttct-----------------------------------------------------------------------------------
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ACGAAGAAGCAATACAGGTC--TAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGgtgaatataaatctaactaaacttatctagtcccttttgtttggtttgactattatggtcttatattttgcaagactgcattaaacagaaacataaaaccagcaaagatatcttctatcccgaaccacttcttgtattatgaaagatgctttatcttccatgttttttaactatccactaattacag
upper sequence: GLYMA02G14880.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0063g00310.t01 (Vitis vinifera), 5'ss of exon 2
GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgt---tagccatcttacaattagtcattttaatgcaccagttagttccactgttttatta-acataaaaagtattaacacatgtgacattgtaaacaactttct
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GGGAAGAAAACCTGGTGCACTGGAGAAAGTAGTAGAGAGAAGGCAGAGAAGGATGATTAAAAACAGAGAATCAGCCGCAAGATCACGAGCTCGTAAGCAGgtgaatatccatcatacatcttttagtggttccacactatttattttgtgttgcttgtgatgctcttgtagtttc----tttgtgatacttcaagctaatcaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207685067|gb|GD665753.1|GD665753EST: CTCGTAAGCAG GCCTACTACTTTCGAACTAGAAGCTGAAGTTGCAAAACTTAAGGAATTAAA
genomic: CTCGTAAGCAGgttagccatc ... tgaatggcagGCCTAC-ACTTTCGAACTAGAAGCTGAAGTTGCAAAACTTAAGGAATTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGGAGAATGATTAAAAATAGAGAATCAGCAGCGAGATCAAGGGCTCGTAAGCAGgttagccatcttacaattagtcattttaatgcaccagttagttccactgttttattaacataaaaagtattaacacatgtgacattgtaaacaactttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA