1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATTACACCCTCACCAACCTCATGGCTGCTGTTATCATTGCTTTCACCTTTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaactacctctggaaacaaaataaataaatcaagctgaaaaaatattattttcttttaaattagaataaagagtaaaaatatgaatcttatag...
species | Glycine max |
transcript | GLYMA02G12980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAEST: gi|209713185|gb|BW681720.1|BW681720
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTA
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTEST: gi|213620219|gb|DB967520.1|DB967520
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTEST: gi|254324736|gb|GR834161.1|GR834161
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTEST: gi|254348161|gb|GR851840.1|GR851840
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGTEST: gi|213588385|gb|DB967871.1|DB967871
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
EST: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAG GATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
genomic: TTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaa ... tttgatgcagGATAACTGGCCTTCTGTTCTGTTTGCCATGGGGGGTGGAGTGGTCCTTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTACACCCTCACCAACCTCATGGCTGCTGTTATCATTGCTTTCACCTTTGGTCAGATTGGCAACGCTCAACCCAACTTCTTGTCTCAGCTTTCTCAGgtgattctaactacctctggaaacaaaataaataaatcaagctgaaaaaatattattttcttttaaattagaataaagagtaaaaatatgaatcttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaaa