1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCGCTTTGTGATCTCTCTCTGCAACCATGTCCGTCGAGAAAGAGAGAGAGACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttacacttacccttcttttttttctttttttttttaatctgatttctttttttgtttttgtttttgttttgaatgagttgttttttaaaatgtt...
species | Glycine max |
transcript | GLYMA02G12930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|151412856|gb|EV282668.1|EV282668
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|18040616|gb|BM308910.1|BM308910
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|15813620|gb|BI785895.1|BI785895
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|7232421|gb|AW567777.1|AW567777
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|192296241|gb|FG991567.1|FG991567
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|7925477|gb|AW831503.1|AW831503
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: CCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|15814301|gb|BI786576.1|BI786576
genomic: CCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|192318665|gb|FK006211.1|FK006211
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|16348185|gb|BI973780.1|BI973780
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|17021581|gb|BM092615.1|BM092615
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|298187449|gb|HO034598.1|HO034598
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|7924330|gb|AW830356.1|AW830356
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|33390149|gb|CA853356.1|CA853356
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|14258542|gb|BG881450.1|BG881450
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTGGATCTGACTGEST: gi|192326726|gb|FK018883.1|FK018883
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTGEST: gi|14989883|gb|BI315564.1|BI315564
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGC-AAACTTGATCTTGATCTGACTGEST: gi|38193306|gb|CF922512.1|CF922512
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
EST: CAGGCCGAGAGATACGAAG AEST: gi|38193306|gb|CF922512.1|CF922512
genomic: CAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcag-
EST: CAGGCCGAGAGATACGAAG AEST: gi|192318664|gb|FK006210.1|FK006210
genomic: CAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcag-
EST: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAG AAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
genomic: GACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttac ... tattatgcagAAATGGTTGAGTGTATGAAGAAAGTAGCAAAACTTGATCTTGATCTGACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTTTGTGATCTCTCTCTGCAACCATGTCCGTCGAGAAAGAGAGAGAGACCCAGGTTTACTTGGCCAAGCTTGCCGAGCAGGCCGAGAGATACGAAGgtcttgttacacttacccttcttttttttctttttttttttaatctgatttctttttttgtttttgtttttgttttgaatgagttgttttttaaaatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG