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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAGTATTCTTATAATGCAGATGCATTCTTCACGGATGGTTTTAATGGGTCTTTGGTTGAGTTCATGGTCTTGCAAACTGAAAACCTTCATGCACAGgttattacaattctgagacagaaaatatgaaatagaaaaaagtaatgatttaactgtttctgcttggctttcctttggaattag

Basic information

species Glycine max
transcript GLYMA02G12580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12580.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0010g00480.t01 (Vitis vinifera), 5'ss of exon 2
-AGCTCAGTATTCTTATAATGCAGATGCATTCTTCACGGATGGTTTTAATGGGTCTTTGGTTGAGTTCATGGTCTTGCAAACTGAAAACCTTCATGCACAGgttattacaattctgagacagaaaatatgaaatagaaaaaagtaatgat--------------ttaactgtttctgcttggctttcctttggaattag
 |   ||| |  | ||| |     |||| |||| ||  ||||| ||| |||| |||||||||||||||||| ||    |||||||||| |||||||| ||||| |||  | ||   ||  |    | |   |    |||||| |  ||||              ||   | |||||| ||||| ||  ||   | | ||
CAATGCAG-ACACATATGACCATCATGCCTTCTCCAAAGATGGGTTTCATGGCTCTTTGGTTGAGTTCATGATCAAAGAAACTGAAAAACTTCATGCCCAGgt-attttagtttctagctaatgtaaaaagagctaaaaaaaatgttgatatctcaattttttattttttatttctgattggccttttttgcaagtcag