Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGgtactttttgacccttctgaatgactagacagtagaatcatcatattgtaaaatttccaagaaactacctttatattgtgctatggataatgcttggata...

Basic information

species Glycine max
transcript GLYMA02G11350.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11350.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G25670.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGgtacttt--ttgacccttctgaatga-ctagacagtagaatcatcatattg--taaaatttccaagaaactacctttatattgtgctatggataatgcttggata
|||    || ||||| |||||  | |||||||| ||||||||| |||  |||||||| || ||||| ||||| |||||||||||||||||||||||||||||  |||  || ||  |  |  |  | |||     ||   |  ||   ||   |   |||||    | ||    ||||  || || ||  ||  ||  ||||| |
AGAACAAGAAGCTCTTTACTCAGCTATTCAAGGGTTTGTTGGTGATTCTTGGAATGGTTCTGATCTTTATCCTGATCCTTGTGGTTGGACTCCTATTCAGgttttttgttttactttcttacaaaatctatgatttattcttttctagttacttgtgatttcttgaacaca--ttttagtttctgttaaaga--at-tttggaga

upper sequence: GLYMA02G11350.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G13230.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGgtactttttgacccttctgaatgactagacagtagaatcatcatattgtaaaatttccaagaaactac-ctttatattgtgctatggataatgcttggata-------
|||  | || ||  | |||||  | |||||||| ||||||||| |||  ||||| || || | ||||||||| |||||||||||||||||||| ||||||||  || ||     |      |  ||      || ||  | | |  | || | ||||     |  ||   ||| ||  ||    |   |  |   | |  |       
AGAACGTGAAGCCTTGTACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGATCCTTGTGGTTGGACTCCAATTCAGgtttttcttacaagtctctctttcct------taaaa--aacttgctttatagtttctctagagttatgttttgtacggtcaagtaagtccttaattgtcatagactc

upper sequence: GLYMA02G11350.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G68780.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGgtactttttg-----acccttct---------------gaatgactagacagtagaatcatcatattgtaaaatttccaagaa-actacctttatatt---gtgctatggataatgcttggata---------------------------------
||||   | |||||||||||| ||||||||||||||||||||| | |  |||||||||||  |||| ||||| || |||||||| ||||||||||| ||||| |||| |      ||  ||||                ||  || | | | ||   |  | || || |||   |  |||||  |  |   ||  |||     ||  | || |||| |||  ||                                 
AGAGCAAGCTGCTCTATACTCTACCATTCAAGGCTTTGTTGGTGAATCTTGGAATGGCTCTTATCTTTATCCTGACCCTTGTGGCTGGACTCCTATCCAGgtcctttctctcatcactattctttgattatcaataaaaaacaacaaaaaactatcttagtaatgttttaagcctatcaagattatgattattgaattcggaagccgttgaaaatg-ttgagtagctgatgtaattctctgttgtttaactctgcag

upper sequence: GLYMA02G11350.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0011g02800.t01 (Vitis vinifera), 5'ss of exon 1
AGAGAGGGATGCTCTATACTCCACCATTCAAGGCTTTGTTGGTAATTGGTGGAATGGCTCAGATCTCTATCCAGATCCTTGTGGTTGGACTCCTATTCAGgtactttttgacccttctgaatgactagacagtagaatcatcatattgtaaaatttccaagaaactac----ctttatattgtgctatggataatgcttggata
||||   || || || ||||| || ||||| || || || ||||  ||||||||||||||||||||||| ||||| || || || ||||||||||| ||||||   ||    || | |||||| ||    |     | | |  |  | |  | ||   |  |  ||       ||| | ||   | |  || |||     ||| 
AGAGCAAGAAGCCCTGTACTCTACTATTCAGGGGTTCGTGGGTACGTGGTGGAATGGCTCAGATCTCTACCCAGACCCGTGCGGGTGGACTCCTATACAGgtatgatta---ccctatgaatggcttcctaacgataccctttttctttgtacttgatacaaggctttgaggttttctcttagtccaatgaaaat-tacagatg