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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTACAAAAGAACCGCTTCTTCTTCTGTTCATCTCTCCCACTCTCACTTTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttcatcttctctgatctgcatcgttgctattgccttctaaatttctgcattattattttaatttgtgcaaaagaaaatgttcacacccttgtttttgttttctctgtattgcttcacag

Basic information

species Glycine max
transcript GLYMA02G10640.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208121198|gb|GD920307.1|GD920307
EST:     TGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|23727600|gb|BU761836.1|BU761836
EST:     TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|19052973|gb|BM731640.1|BM731640
EST:     CCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: CCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|192315263|gb|FK007721.1|FK007721
EST:     TTTAATTTTTTGTCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|193570947|gb|FK529966.1|FK529966
EST:     GCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: GCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|298192845|gb|HO033279.1|HO033279
EST:     TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|58015388|gb|CX702130.1|CX702130
EST:     TACCGCCGTGGTGGCCGCCGAAG                         AAAGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|13791520|gb|BG654111.1|BG654111
EST:     TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|10847035|gb|BF069805.1|BF069805
EST:     CTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: CTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|58025133|gb|CX711874.1|CX711874
EST:     CGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: CGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|58018364|gb|CX705106.1|CX705106
EST:     TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|19268713|gb|BM884969.1|BM884969
EST:     CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|192301564|gb|FG994776.1|FG994776
EST:     TTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|58015707|gb|CX702449.1|CX702449
EST:     GTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATTTTCGACTCACCATGAAGC
genomic: GTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|9902219|gb|BE611187.1|BE611187
EST:     CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: CTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
EST: gi|298187789|gb|HO031746.1|HO031746
EST:     TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAG                         AAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC
genomic: TTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttc ... tgcttcacagAAGGAGAGTAGAGAGCGCAATCGAGTCTTCATCTTCGACTCACCATGAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTTACAAAAGAACCGCTTCTTCTTCTGTTCATCTCTCCCACTCTCACTTTTAATTTTTTGCCCTAAAACCCTCGCTACCGCCGTGGTGGCCGCCGAAGgtaagttttcatcttctctgatctgcatcgttgctattgccttctaaatttctgcattattattttaatttgtgcaaaagaaaatgttcacacccttgtttttgttttctctgtattgcttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG