Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCAATTCTTCCCTCTGTTCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTgtatgtattgcatgcatcactttcatttccattcagatcccaaatcgatcaaactagtgtgtacttaatattcatgagctagattttagggtttaattagatctcaatagggttttctttacattctatcaattaacctccggtgcttttgaaaattgcag

Basic information

species Glycine max
transcript GLYMA02G10600.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10600.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G24330.1 (Arabidopsis thaliana), 5'ss of exon 1
TGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCAATTCTTCCCTCTGTTCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAA---CCCAAGTgtatg-tattgca-tgcatcactttcatttccattcagatcccaaatcgatcaaactagtgtgtacttaatattcatgagctagattttagggtttaattagatctcaatagggttttctttacattctatcaattaacctccggtgcttttgaaaattgcag
   ||    || |  || || ||||| ||| | || || ||    || |||||||||||||||||||||||||| ||||| ||||| ||  |    || || |||| | | || || |  | |    | | |   |||   |  |    |   |   | |||  | |  ||| | || | |   ||||||||||| ||    |                                                               
---GATAAAGGGTTTCATCTTTTCTGTCTCAGACCGATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTCTGCCCTTCTTGTTCCAAACATCAGATCCCTAAATgtaagctttttcactatacccacatgactctaatttcaaagcttccttcttttgattaggatatgtttattgttga-gctttagattttaggattcttctg--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283619|gb|BE021178.1|BE021178
EST:     TCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGT                         CTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCT
genomic: TCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTgtatgtattg ... aaaattgcagCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCT
EST: gi|13252302|gb|BG363205.1|BG363205
EST:     TCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGT                         CTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCT
genomic: TCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTgtatgtattg ... aaaattgcagCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCT