Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCCTTGCCTCCGCTGGATTCGCATCTACAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGgtaattgatgatgcttgttttctgttgaatgaattgctagttatttgtttagtttttagataatcgatgcttgttttctgttaattgttgatgcag

Basic information

species Glycine max
transcript GLYMA02G10590.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 1
CCTCCCTTGCCTCCGCTGGATTCGCATCTACAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGgtaattgatgatgcttgttttctgttgaatgaattgctagttatttgtttagtttttaga-taatcgatgcttgttttctgttaattgttga--tgcag---
| | |||||  |||| |||||||| |  |||  |||| ||||||||||  || ||||||||||||| || |||||||||||| | ||||| ||||| |||||| || |   | |  | ||   |  |   ||||   | | | |    |  |    | || | || | |     |  | |  |  |||||||  ||||    
CTTTCCTTGTTTCCGATGGATTCGAACTTACCGATGGAGCGAGTATTTTAAGCTCGATCTCATGGCTGGTATCACCGTCGGTATAATGCTTGTTCCCCAGgtactttact-ttcaagcttaaggaagctggaatcattggctttagaataggaaactggaattattggtttcaatcgtattgtc-ttgttgagctgcaaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254320748|gb|GR827197.1|GR827197
EST:     AGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAG                         TCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCT
genomic: AGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGgtaattgatg ... gttgatgcagTCGATGTCCTATGCAAAATTGGCTGGACTTCAACCGATATATGGACTCT