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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCCTTCTCTCTCTCTCCCTCTTTCTCGTCACTAGCTCTGTGCATTCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttctttccctcgatccgtttctctttcacttggatctgtttctttgatttccgttttcaattttcacctttcaattttggttttttcttcaatt...

Basic information

species Glycine max
transcript GLYMA02G10170.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717795|gb|BW668932.1|BW668932
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|9264513|gb|BE352660.1|BE352660
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|19347448|gb|BM892328.1|BM892328
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|7146747|gb|AW508669.1|AW508669
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209721507|gb|BW671687.1|BW671687
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|26058684|gb|CA801598.1|CA801598
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|14125829|gb|BG790267.1|BG790267
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209700254|gb|BW664479.1|BW664479
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|21479734|gb|BQ576417.1|BQ576417
EST:     TTTTCTCTCGCTCTCTGCCTTCCATCACCCTCGCCATTTCCCTTCCCAAG                         ATAGTAGAAGATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|13181560|gb|BG352900.1|BG352900
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|7232232|gb|AW567589.1|AW567589
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|26058538|gb|CA801452.1|CA801452
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209717612|gb|BW679692.1|BW679692
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|7030276|gb|AW460059.1|AW460059
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|8283152|gb|BE020713.1|BE020713
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCAATTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|8282939|gb|BE020500.1|BE020500
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCAATTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|13181648|gb|BG352988.1|BG352988
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAA-ATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|192326949|gb|FK019226.1|FK019226
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213599164|gb|DB962243.1|DB962243
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213599862|gb|DB973906.1|DB973906
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|24135382|gb|BU925883.1|BU925883
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|24136171|gb|BU926681.1|BU926681
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213594404|gb|DB967988.1|DB967988
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|12496498|gb|BG047094.1|BG047094
EST:     CACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACACTCTTGTTTGTGACA
genomic: CACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAAC-CTCTTGTTTGTGACA
EST: gi|17023480|gb|BM094514.1|BM094514
EST:     TTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|151400375|gb|EV270189.1|EV270189
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|12772028|gb|BG236955.1|BG236955
EST:     TCTTCTCTCGCTCTCTGCCTT-CATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213613943|gb|DB960936.1|DB960936
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213589283|gb|DB967762.1|DB967762
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|7686433|gb|AW757081.1|AW757081
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209701316|gb|BW655911.1|BW655911
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209698678|gb|BW652479.1|BW652479
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|15812971|gb|BI785246.1|BI785246
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213600758|gb|DB968806.1|DB968806
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|27426342|gb|CA937862.1|CA937862
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|209701528|gb|BW667349.1|BW667349
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|213587909|gb|DB971398.1|DB971398
EST:     GCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: GCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|42722420|gb|CK768322.1|CK768322
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
EST: gi|15286966|gb|BI470857.1|BI470857
EST:     TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAG                         ATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA
genomic: TCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttct ... tatcctgcagATAGTAGAAGATGGCAGACACTGAGGATATTCAACCTCTTGTTTGTGACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGTCCTTCTCTCTCTCTCCCTCTTTCTCGTCACTAGCTCTGTGCATTCTTCTCTCGCTCTCTGCCTTCCATCACACTCGGCATTTCCTTTCCCAAGgtccgtttctttccctcgatccgtttctctttcacttggatctgtttctttgatttccgttttcaattttcacctttcaattttggttttttcttcaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc