Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag

Basic information

species Glycine max
transcript GLYMA02G08360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 2
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag
  |||||||| |||||| | |||||||||||||| || ||||||||||| ||||| ||||||||||| || ||||| || || || ||||| || |||||||| | ||| |  | ||||    || |   ||  |       |   | |||||  |  |||  | ||| ||                                        
TTGATCCTAATAATGTTCTACAAAGTTGGGACCCAACTCTGGTCAATCCGTGCACTTGGTTTCATGTTACTTGCAATAACGACAACAGTGTTATCAGAGTgtacg-tgc-taccttttgtctactatgcaatccacgcctcatacatttttattgaaattatctccatttttcag------------------------------------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 2
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttct-tcttttttaatgtgttctttcctttggtttaatatcag
| ||| ||||||||||  |||| |||||||| || || ||||||||||||||||||||||| |||||||| || |||  ||| || || || || |||||||||| |        |   |||  | |||| ||||   | || |   | | | | |  | |   |||| || | | ||   | || | ||  ||||||| |           
AAGATGCTAACAATGTGCTGCAGAGTTGGGATCCCACTCTGGTCAATCCATGCACATGGTTCCATGTAACTTGTAACCCTGACAACAGCGTGATCAGAGTgtaagtt------tttgacagaattatcatttttaggcttgt-caaaagtaagaaatgtga---tcattttgtgtgttgactgatctatt--ttcctttcgcag--------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 2
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag
| |||||||| |||||| | ||||||||||| || || |||||||| || ||||| ||||||||||| || ||||| ||||| || ||||| || |||||||| | | ||  |  |      ||    ||||||     | |     | ||  |||      | |  | |  ||| |  | || || ||   || ||||            
ATGATCCTAATAATGTTCTACAAAGTTGGGATCCCACTCTGGTCAACCCCTGCACTTGGTTTCATGTTACCTGCAATAATGACAACAGTGTTATCAGAGTgtaggtt-caccttttcc----tccactatattt-----catcagtgagttgcaca------tattctgtgtttcgtactgaaagtttttcctcatttgcag---------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G150024_T03 (Zea mays), 5'ss of exon 2
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgtatttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag
  ||| | |||||||| ||||| ||||||||  | || || || |||||||| ||||||||||| || || || ||||  ||||| ||||| || ||||||||||  | |||       | | || |||||| |    || ||    | |  ||     |  | |  || |  |  || | |||||   |  |      |           
TAGATACGAACAATGTCTTGCAGAGTTGGGATTCCACTCTTGTTAATCCATGTACATGGTTTCACGTTACGTGTAACAGCGATAACAGTGTTATCAGAGTgtaagtcg-atga-----aaaagctctcatatat----tcatttcaaagtgttag----tgatgttctccttctggttctaaatgtccccactttcacag-----------

upper sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 2
AGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACACTGGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGAGTgtaagctgcatgtcctttgagatctgtcatatttattttcgttctgta---tttatacagcttagtttcatcttcttcttttttaatgtgttctttcctttggtttaatatcag
|||| || ||||||||  | || |||||||| || || || ||||| || ||||||||||||||||| || ||||| | |||||||||||| |||||||||||||| || | ||| || | |  | |   ||||| |  |    ||||   | |  |  ||||  |        |  | | | | ||||    || | | |  ||| | |    
AGGACCCAAACAATGTCCTACAGAGTTGGGATCCGACCCTTGTCAACCCCTGCACATGGTTTCATGTTACCTGCAATAGTGATAATAGTGTTATAAGAGTgtaagcagctt-tcccttcatacgtcttccatttactggctcagtgtaacttgtgaattgcttgatccatgaaacgccctgtatgatgttgctttccatatattttcacag---