Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctctctctctctcacttccatttttatttcttcaccactcaatcgctcaaactctaccaacaattattagtattgttcttgtttttagaataaa...

Basic information

species Glycine max
transcript GLYMA02G08010.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174013|gb|HO017349.1|HO017349
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCGCCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|11689070|gb|BF596746.1|BF596746
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|192316837|gb|FK006078.1|FK006078
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298176568|gb|HO023155.1|HO023155
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|120531368|gb|EH259501.1|EH259501
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298180864|gb|HO022303.1|HO022303
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298164570|gb|HO014215.1|HO014215
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|17023729|gb|BM094763.1|BM094763
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|193699254|gb|FK637679.1|FK637679
EST:     CACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: CACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298168114|gb|HO013377.1|HO013377
EST:     TCGAAGAACGACAAGCTCGTGGACTCAAAACCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|4313775|gb|AI460894.1|AI460894
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|17401526|gb|BM178308.1|BM178308
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGTCTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|16996513|gb|BM085885.1|BM085885
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|15662834|gb|BI700205.1|BI700205
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298196163|gb|HO044554.1|HO044554
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298194936|gb|HO043408.1|HO043408
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAGCACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|207794720|gb|GD764807.1|GD764807
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCGCCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|120495839|gb|EH224006.1|EH224006
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|120496028|gb|EH224195.1|EH224195
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|16347369|gb|BI972964.1|BI972964
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|19453543|gb|BM954953.1|BM954953
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298183125|gb|HO028388.1|HO028388
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|208171065|gb|GD969320.1|GD969320
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAGAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAA
EST: gi|207765190|gb|GD737241.1|GD737241
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACA
EST: gi|254324772|gb|GR834197.1|GR834197
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|11687403|gb|BF595079.1|BF595079
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|7326526|gb|AW620324.1|AW620324
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|193645358|gb|FK587932.1|FK587932
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCA-CA-A-GTTTGTCTTCTGGT
EST: gi|298193383|gb|HO033817.1|HO033817
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGATACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|207737813|gb|GD716501.1|GD716501
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CAGCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCT
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCA-CA-A-GTTTGTCTTCTGGTACACTCGTCGAACACCT
EST: gi|192322879|gb|FK014810.1|FK014810
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|21995195|gb|BQ786723.1|BQ786723
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|9565360|gb|BE474869.1|BE474869
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|254324093|gb|GR840518.1|GR840518
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCAG                       
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA--AGgttcctctct ... ctattagc
EST: gi|298181032|gb|HO022471.1|HO022471
EST:     -CGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTCCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|209726130|gb|BW675305.1|BW675305
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|151410799|gb|EV280614.1|EV280614
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|207698623|gb|GD680162.1|GD680162
EST:     AGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: AGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|10848096|gb|BF070649.1|BF070649
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCAG                       
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA--AGgttcctctct ... ctattagc
EST: gi|208322503|gb|GE125176.1|GE125176
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298176584|gb|HO023171.1|HO023171
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|151403487|gb|EV273297.1|EV273297
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|9564576|gb|BE474085.1|BE474085
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|9899538|gb|BE608506.1|BE608506
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|18041218|gb|BM309512.1|BM309512
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|151412337|gb|EV282149.1|EV282149
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|192316836|gb|FK006077.1|FK006077
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|8285169|gb|BE022728.1|BE022728
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298187089|gb|HO034238.1|HO034238
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAGGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|6482570|gb|AW201821.1|AW201821
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|193526773|gb|FK487127.1|FK487127
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACA
EST: gi|192323024|gb|FK016755.1|FK016755
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|193675986|gb|FK617816.1|FK617816
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACA
EST: gi|11687361|gb|BF595037.1|BF595037
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298189597|gb|HO038000.1|HO038000
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|6482757|gb|AW201979.1|AW201979
EST:     CAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: CAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|15203071|gb|BI425839.1|BI425839
EST:     TCGAAGAACGACAAGCTCG-GTACTCTAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|213588418|gb|DB959738.1|DB959738
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|6341462|gb|AW164286.1|AW164286
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAG                         CACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctct ... ctattagcagCACAAGTTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAATCAA
EST: gi|298196429|gb|HO041172.1|HO041172
EST:     TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGCAG                       
genomic: TCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCT-AA--AGgttcctctct ... ctattagc

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATTCTTCTTCTCAATTGGCATCGGCACTTGATTCCAACAACAAAGAAATCGAAGAACGACAAGCTCGTGAACTCAAAGCCGGACTTCACCCCCTAAAGgttcctctctctctctctcacttccatttttatttcttcaccactcaatcgctcaaactctaccaacaattattagtattgttcttgtttttagaataaa

- - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT