Sequence
atgc intronic sequence ATGC exonic sequenceATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCTTTGCCAGTTTCCATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctacgtttaaataagatctatattcttttttatattttaaaacttataaagataagaattgctttaatatctagaaaaaaattatggattttga...
Basic information
species | Glycine max |
transcript | GLYMA02G07700.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07700.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g07670.t01 (Vitis vinifera), 5'ss of exon 1
ATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCTTTGCCAGTTTCCATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctacgtttaaataagatctatattcttttttatattttaaaacttataaagataagaattgctttaatatctagaaaaaaattatggattttga-------
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ATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254344527|gb|GR851224.1|GR851224EST: CATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAG CTAAGGCCGAGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACC
genomic: CATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctac ... tcttcaacagCTAAGGCCGAGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCTTTGCCAGTTTCCATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctacgtttaaataagatctatattcttttttatattttaaaacttataaagataagaattgctttaatatctagaaaaaaattatggattttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaaa