Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCATTTGGCAGAAACTATGTGCCTACTTGGGCCTTTGATCACATCAAATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaactatatatgtgtgctaatgctatgctaatatgatatgatatataaagtaattgagactgttataaaaaaaaatcataatactcatgcaattttgagcag

Basic information

species Glycine max
transcript GLYMA02G07610.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453236|gb|BM954646.1|BM954646
EST:     CAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: CAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|213601484|gb|DB970414.1|DB970414
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|7693504|gb|AW761596.1|AW761596
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|9900707|gb|BE609675.1|BE609675
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGTTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|7283319|gb|AW595927.1|AW595927
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|17153838|gb|BM143771.1|BM143771
EST:     ACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|19452715|gb|BM954125.1|BM954125
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|8827506|gb|BE211236.1|BE211236
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|22524132|gb|BU082943.1|BU082943
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|10846099|gb|BF071249.1|BF071249
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|10709298|gb|BF009022.1|BF009022
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|11688424|gb|BF596100.1|BF596100
EST:     TACCTCAATGGTGGTTCTGAGATTCAGCCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: TACCTCAATGGTGGTTCTGAGATTCAGC-TTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|14990653|gb|BI316326.1|BI316326
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
EST: gi|151406547|gb|EV276362.1|EV276362
EST:     ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTG                         GTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT
genomic: ATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaact ... ttttgagcagGTACTGGCTTCCAATCCAAAGGATCCTACCTGTTTGGTCACTTCAGCATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCCATTTGGCAGAAACTATGTGCCTACTTGGGCCTTTGATCACATCAAATACCTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGgtatgtaactatatatgtgtgctaatgctatgctaatatgatatgatatataaagtaattgagactgttataaaaaaaaatcataatactcatgcaattttgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT