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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaagattttacattttgcatattatgatattatatttataataataacaacgcgttgatttgtttcttcag

Basic information

species Glycine max
transcript GLYMA02G07250.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgt----tccaacaagattt--------tacattttg--catattatgatatta-tatttataataat-aacaacgcgtt--gatttgtttcttcag------
  | || ||   ||||||||||||  |||||||||| ||||||||| |||||||||||||||||||  || |||| |||| ||  ||||| ||  |  ||||     |   | | | |           |  | ||  |  ||   | | ||  | ||  ||||  |  |  |    ||  ||||| | | ||  |      
GCTGACGACGCTCTTCAGCTACGGGCTGCTCTTCGCGTTCGGCCAGCTCAGGGATTTCTTCCGCAAGCTCATCGATTGGTTCAAGGCCAAGAACGTCAAGgtagggcctggcgaaaatcgctgcgggctctctctggtcggatccgggtgtttctcttcgtaattcttgatgagagatttggatttttctttttggacgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaagattttac----attttgcatattatgatattatatttataat-aataacaacgcgttgatttgtttcttcag------------------
  | |||||   ||||||||||||| | |||||||||||||||||| || | || ||||||||||  ||| |||||    |||   ||| ||||||  |||||     |   | |  |     ||||   | || |  | | || ||| |  |   | |   | || | | |       ||                    
GCTGACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCTGGCAAATCCAGCAATCTCAAGgttttttgattctctctctctcgttttctctttttttttctgatttttttttttggttatctctcgctcactcacgctgtcctccttggtgaattcgttag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G152888_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaagattttacattttgcatattatgatatt-atatttataataataacaacgcgttgatttgtttcttcag----------------------------
  | |||||    |||||||||||| |||||||||||||||||||| |||||||||||||||||||  || ||||||||| ||  ||||| ||  |  |||| |      |     | |||  || | |    | |   ||       ||   | |      ||  || || |    ||                            
GCTGACCACGCTGTTCAGCTACGGCCTGCTCTTCGCCTTCGGCCAGCTCAGGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcgggcgggccga-attgcgcctctccccacacggatccgagagattccatcccgatttttcttggtgttcgtaggcctgattcggcgtttggcttcgtgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttc-caacaagattttacattttgc-------atattatgatattatatttataataataacaacgcgttgatttgtttcttcag------------------------------
  | |||||    |||||||||||  |||||||||||||||||||| |||||||||||||||||||  || ||||||||| ||  ||||| ||  |  |||| | ||    |      |     ||       ||             |     |      | | | |||     | ||||||                                 
GCTGACCACGCTGTTCAGCTACGGGCTGCTCTTCGCCTTCGGCCAGCTCAGGGATTTCTTCCGCAAGTTCGTCGACTGGTTCAAGGCCAAGAACGTCAAGgtacgcagggcggccggccggccggccggccgaattccgcctccccgcacccggatccgggagatcccgtcccaatttttcttggtatttctgattcagcgtttggcttcatacag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G030862_T01 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCA-Ggttccaacaagatt--ttacattttgcatattatgatattatatttataat----aataacaacgcgttgatttgtttcttcag--------------------------------------------------------------------------------------------
            ||||||||||||  |||||||||||||||||||| |||||||| |||||||| |  |  ||| ||| | |||  |||||||     | |    |||  || |       |    | |   | | || |  |              | |   |      ||| |  | |  |||                                                                                            
------------CTTCAGCTACGGGCTGCTCTTCGCCTTCGGCCAGCTCAGGGATCTCTTCCGCCACCTGCTCGGCTGCTTCAGACCCAACAAGGACGACGACGTCAAGCAGgtcggccggaccccggacggtttaatttcctccgcgcgccgggggagagagaaagagagatctcgtcccgcagcagttttaaatttggctgctccaacttttctgaggtggtagtggtaggtggcctgatcccggcggcattgcctctgccttcaattcatgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttc-caacaagattt-----tacattttgcatattatgatattatatttataataataacaacgcgttgatttgtttcttcag
  | |||||   ||||||||||||| | |||||||||||||||||| || | || ||||||||||  ||| |||||    |||   ||| ||| ||  |||| | |  |  | |       | | |   ||    |     ||   |       | |   |    ||||| |||   ||  |||
GCTCACCACGCTCTTCAGCTACGGCCTCCTCTTCGCCTTCGGCCAGCTCCGCGACTTCTTCCGCAGGATCCTCGACGCCCGCAAGCCCAGCAACCTCAAGgtgcgctgcccgctccccggatgcgtcgcgctcgctgctccatctcacgccggctgactccttgccgttgcttt--ctccgcag

upper sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 1
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaagattttacattttgcatattatgata-ttatatttataataataacaacgcgttgatttgtttcttcag--------------------------------
 |||||||||||||||||||| ||||| ||||||| |||||||||  |||||||  ||||||||||||| || |||||||   || ||||||||||||||||  |     | || | |   ||| || || | ||   | |  || |        |  || |   | ||  |||||||                                 
TTTAACCACCTACTTCAGCTATGGCTTACTCTTCGTCTTCGGCCAAATCAGGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctc---ttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19934798|gb|BQ079828.1|BQ079828
EST:     CTGGTGCAGCGCCAACAATCTTCAG                         GGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG
genomic: CTGGTGCAGCGCCAACAATCTTCAGgttccaacaa ... gtttcttcagGGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG
EST: gi|7147563|gb|AW509485.1|AW509485
EST:     GGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAG                         GGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG
genomic: GGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaa ... gtttcttcagGGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG
EST: gi|213615414|gb|DB965665.1|DB965665
EST:     GGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAG                         GGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG
genomic: GGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaa ... gtttcttcagGGTTACGCGCCGATCTGCTTAGGGCTCGAAGATTTCTATATTCGCCGCTTG