Sequence
atgc intronic sequence ATGC exonic sequenceAGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTTCTTGTTAGTTGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgagtaaatgtgtgtttattggagtttgacttgtcaacttgctgatcgttcaggtctgtttgggttttggaagagcactaattgaaggaatcta...
Basic information
species | Glycine max |
transcript | GLYMA02G07240.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G07240.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G12820.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTTCTTGTTAGTTGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgagtaaatgtgtgtttattggagtttgacttgtcaacttgctgatcgttcaggtctgtt--tgggttttggaagagcactaattgaaggaatcta
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ACCTTCTTTCACGTTCTTTTGCAAATTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTTACCACTGATGGCTTAGCTTCCATTGCCGCTAATTGCAGgtaaag------gcctttcttttactggcgtttctctaggttttatgttgttt-ttaaaatgtgttgttgtctttcttattag-------------------
upper sequence: GLYMA02G07240.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G26810.1 (Arabidopsis thaliana), 5'ss of exon 1
AGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTTCTTGTTAGTTGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgagtaaatgtgtgtttattggagtttgacttgtcaacttgctgatcgttcaggtctgtttgggttttggaagagcactaattgaaggaatcta----
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AGCTGCTTTCTCGTTCTTTTGTCAATTTTAAGTCTTTGGTCCTTGTTAGCTGTGAAGGTTTTACCACTGATGGTCTTGCCTCTATTGCCGCTAATTGCAGgtatcacttttttct-tgtgtgttataaaaattg-ttccttgtgttgt--aagattaggttttatatgtgactatagatgctatgtttcattgtggtttacata
upper sequence: GLYMA02G07240.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g01330.t01 (Vitis vinifera), 5'ss of exon 2
AGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTTCTTGTTAGTTGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgagtaaatgtgtgtttattgg---agtttgacttgtcaacttgctgatcgttcaggtctgtttgggttttggaagagcactaattgaaggaatcta
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AGCTGCTTGCTCGATCGTTCGTGAATTTCAAGTCTCTGGTTTTAGTCAGCTGTGAAGGGTTTACCACCGATGGACTTGCAGCCGTTGCTGCAAATTGCAGgtagga--gctggctgttcattttttagtttactttagctagtatttttgcatatttttataagttgtt-gcctcttctgtccctttcatttatttgtttttaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10237008|gb|BE805896.1|BE805896EST: TGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAG GTTCCTTAAGGAGCTGGATTTGCAGGAAAATGAAGTTGATGACCACAGAGG
genomic: TGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgag ... taaaatgtagGTTCCTTAAGGAGCTGGATTTGCAGGAAAATGAAGTTGATGACCACAGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTACTTTCGCGTTCTTTCATGAATTTCAAGTCTTTGGTTCTTGTTAGTTGTGAAGGGTTCACCACCGATGGACTTGCAGCTATAGCTGCAAATTGTAGgtgagatgagtaaatgtgtgtttattggagtttgacttgtcaacttgctgatcgttcaggtctgtttgggttttggaagagcactaattgaaggaatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC