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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTTTGTTTAACAAAACCCATTATCAGATCAGATCCGATCAGATCCTCTTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttcattccgattctacaaatttctccaaatttcgaagcttcctcatttcaattttttttttgttctttttttattgtggtggcag

Basic information

species Glycine max
transcript GLYMA02G07160.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796895|gb|AW782289.1|AW782289
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|16105843|gb|BI893583.1|BI893583
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|7925767|gb|AW831793.1|AW831793
EST:     TTCAGATTCNGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGA
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGA
EST: gi|22523529|gb|BU082340.1|BU082340
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|192312614|gb|FK004302.1|FK004302
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|7284243|gb|AW596839.1|AW596839
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|15204143|gb|BI426911.1|BI426911
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
EST: gi|192312613|gb|FK004301.1|FK004301
EST:     TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGG                         GGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG
genomic: TTCAGATTCGGATCACCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGgtaactcttc ... gtggtggcagGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTG