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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGgtatctctctctcactttggtgcccaattgagggtctttcttgttttgtcactgctccaccaaatttcaagacttttctcaatttcatcatgccccatca...

Basic information

species Glycine max
transcript GLYMA02G06820.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06820.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0207g00200.t01 (Vitis vinifera), 5'ss of exon 1
GCGCCAGTTTGGCTCTCCGTTTGGGCCAAACAGTCTTTTCCACAGCTTCCCTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGgtatctctctctcactttggtgcccaattgagggtctttcttgttttgtcactgctccaccaaatttcaagacttttctcaatttcatcatgccccatca----
||||||| ||| |||| ||  |||| || ||  |||||||| | ||  |||||||||||||||| ||||||||||| |||||  | || || || ||||||||   |    |        |   |  |  |  |  |||    ||   |  | |  ||      || |     ||      ||||  |  ||    ||      
GCGCCAGCTTGTCTCTGCGGATGGGGCAGACCATCTTTTCCTCTGCCGCCCTTCTCTTCATGTGTTTGGATGTTGAATTCTACAGTTATACGGCCTTCTGgtaatcccaatttctccaaattatctttaaattggatttaaccttcaatatccgtgccct----ttcctctgtttcctctgattttctactgtagtattggaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000808|gb|BI321622.1|BI321622
EST:     CTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTG                         CTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAAC-TTGTT
genomic: CTTCTCTTCATGTGCTTGGATGTTGATTTCTATGGCTACACTGCTTTCTGgtatctctct ... tattccacagCTATTTGGTAACCGTCATGGGTTTGGTAATTCCCTGGAGCATAACACTGTT